Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Reject
Multiple quality flags — this pose should be deprioritised or discarded.
✓ Excellent LE (-1.132 kcal/mol/HA)
✓ Good fit quality (FQ -9.83)
✓ Strong H-bond network (10 bonds)
✗ Very high strain energy (23.0 kcal/mol)
✗ Geometry warnings
✗ Protein contact clashes
ℹ SASA not computed
Score
-24.900
kcal/mol
LE
-1.132
kcal/mol/HA
Fit Quality
-9.83
FQ (Leeson)
HAC
22
heavy atoms
MW
295
Da
LogP
2.41
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, protein contact clashes, strain 23.0 kcal/mol
Interaction summary
Collapsible panels
H-bonds 10
Hydrophobic 24
π–π 3
Clashes 4
Severe clashes 0
| Final rank | 3.626163778508446 | Score | -24.8998 |
|---|---|---|---|
| Inter norm | -1.16212 | Intra norm | 0.0303165 |
| Top1000 | no | Excluded | no |
| Contacts | 18 | H-bonds | 4 |
| Artifact reason | geometry warning; 11 clashes; 4 protein contact clashes; high strain Δ 26.9 | ||
| Residues | A:ALA34;A:ASP54;A:HIS182;A:ILE160;A:ILE47;A:LEU90;A:LEU97;A:MET55;A:NDP301;A:PHE233;A:PHE58;A:PHE94;A:THR184;A:TRP49;A:TYR166;A:TYR57;A:VAL32;A:VAL33 | ||
Protein summary
223 residues
| Protein target | T06 | Atoms | 3452 |
|---|---|---|---|
| Residues | 223 | Chains | 1 |
| Residue summary | ARG:408; VAL:352; LYS:308; LEU:304; PRO:238; ILE:209; GLU:195; THR:182; SER:176; ALA:160; PHE:140; ASN:126; GLY:126; ASP:108; GLN:85; NDP:74 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: permissive.
| Name | 8RHT | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 6 |
| IFP residues | A:ALA34; A:ASP54; A:HIS182; A:ILE160; A:ILE47; A:LEU90; A:LEU97; A:MET55; A:NDP301; A:PHE233; A:PHE58; A:PHE94; A:PRO91; A:SER89; A:THR184; A:THR86; A:TRP49; A:TYR166; A:TYR57; A:VAL32; A:VAL33 | ||
| Current overlap | 18 | Native recall | 0.86 |
| Jaccard | 0.86 | RMSD | - |
| H-bond strict | 3 | Strict recall | 0.60 |
| H-bond same residue+role | 3 | Role recall | 0.75 |
| H-bond same residue | 3 | Residue recall | 0.75 |
Hydrogen bonds
Mode: permissive. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 230 | 1.7972984638498872 | -1.67254 | -37.1541 | 6 | 19 | 0 | 0.00 | 0.00 | - | no | Open |
| 214 | 2.4004023492030724 | -1.23742 | -26.5823 | 11 | 18 | 1 | 0.05 | 0.00 | - | no | Open |
| 254 | 2.535986888857927 | -1.63666 | -35.606 | 8 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 216 | 2.634788302715577 | -1.20522 | -25.9334 | 6 | 18 | 1 | 0.05 | 0.00 | - | no | Open |
| 256 | 2.755501728414221 | -1.60761 | -36.108 | 8 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 228 | 2.766972898471771 | -1.65565 | -37.1036 | 8 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 229 | 2.853947949080875 | -1.5954 | -35.5409 | 6 | 18 | 0 | 0.00 | 0.00 | - | no | Open |
| 215 | 2.880668670991616 | -1.19731 | -25.8291 | 9 | 18 | 1 | 0.05 | 0.00 | - | no | Open |
| 184 | 3.2395149883614733 | -1.03998 | -23.2386 | 7 | 12 | 0 | 0.00 | 0.00 | - | no | Open |
| 255 | 3.5097639402484626 | -1.50656 | -33.4296 | 7 | 18 | 0 | 0.00 | 0.00 | - | no | Open |
| 256 | 3.5559040375004214 | -1.18914 | -27.1667 | 4 | 19 | 19 | 0.90 | 0.75 | - | no | Open |
| 257 | 3.626163778508446 | -1.16212 | -24.8998 | 4 | 18 | 18 | 0.86 | 0.75 | - | no | Current |
| 258 | 4.478692184007521 | -1.32294 | -29.7007 | 5 | 18 | 18 | 0.86 | 0.75 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-24.900kcal/mol
Ligand efficiency (LE)
-1.1318kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-9.826
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
22HA
Physicochemical properties
Molecular weight
295.4Da
Lipinski: ≤ 500 Da
LogP (cLogP)
2.41
Lipinski: ≤ 5
Rotatable bonds
4
Conformational strain (MMFF94s)
Strain energy (ΔE)
23.04kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
32.86kcal/mol
Minimised FF energy
9.82kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.