Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Weak
Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-0.746 kcal/mol/HA)
✓ Good fit quality (FQ -6.88)
✗ High strain energy (13.9 kcal/mol)
✗ Geometry warnings
ℹ SASA not computed
Score
-19.407
kcal/mol
LE
-0.746
kcal/mol/HA
Fit Quality
-6.88
FQ (Leeson)
HAC
26
heavy atoms
MW
350
Da
LogP
3.86
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: mixed
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, strain 13.9 kcal/mol
Interaction summary
Collapsible panels
H-bonds 2
Hydrophobic 18
π–π 3
Clashes 8
Severe clashes 1
| Final rank | 5.349394923224256 | Score | -19.4068 |
|---|---|---|---|
| Inter norm | -0.732578 | Intra norm | -0.0138389 |
| Top1000 | no | Excluded | yes |
| Contacts | 11 | H-bonds | 2 |
| Artifact reason | excluded; geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 14.3 | ||
| Residues | A:ARG17;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:MET233;A:NDP302;A:PHE113;A:TYR194;A:VAL237;D:ARG287 | ||
Protein summary
308 residues
| Protein target | T04 | Atoms | 4210 |
|---|---|---|---|
| Residues | 308 | Chains | 3 |
| Residue summary | LEU:494; ALA:421; ARG:384; VAL:368; THR:295; TYR:231; SER:198; PRO:196; ILE:190; LYS:176; ASN:154; GLU:150; GLY:126; PHE:120; HIS:119; ASP:108 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 7PXX | Contacts | 19 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 8 |
| IFP residues | A:ARG17; A:ASP181; A:GLY225; A:HIS241; A:LEU188; A:LEU226; A:LEU229; A:LYS198; A:MET233; A:NDP302; A:PHE113; A:PRO115; A:SER111; A:SER112; A:SER227; A:TYR191; A:TYR194; A:VAL230; D:ARG287 | ||
| Current overlap | 10 | Native recall | 0.53 |
| Jaccard | 0.50 | RMSD | - |
| H-bond strict | 0 | Strict recall | 0.00 |
| H-bond same residue+role | 0 | Role recall | 0.00 |
| H-bond same residue | 1 | Residue recall | 0.20 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1727 | 2.7013789179555596 | -0.848199 | -22.0024 | 3 | 13 | 12 | 0.63 | 0.20 | - | no | Open |
| 2015 | 4.308034857388035 | -1.2202 | -33.6145 | 9 | 14 | 0 | 0.00 | 0.00 | - | no | Open |
| 2013 | 4.327072932551202 | -1.01721 | -30.0447 | 5 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 2016 | 5.458472724933829 | -1.02731 | -26.6384 | 4 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 1729 | 4.0538430472136655 | -0.794997 | -15.4184 | 0 | 11 | 10 | 0.53 | 0.00 | - | yes | Open |
| 1732 | 4.525465113612095 | -0.871074 | -20.4914 | 2 | 12 | 12 | 0.63 | 0.20 | - | yes | Open |
| 1728 | 4.819051289364875 | -0.889571 | -22.36 | 4 | 12 | 12 | 0.63 | 0.20 | - | yes | Open |
| 1730 | 5.349394923224256 | -0.732578 | -19.4068 | 2 | 11 | 10 | 0.53 | 0.00 | - | yes | Current |
| 1725 | 5.627792880151362 | -0.731463 | -17.4929 | 3 | 9 | 9 | 0.47 | 0.20 | - | yes | Open |
| 1726 | 55.20247510241552 | -0.621677 | -21.502 | 1 | 11 | 10 | 0.53 | 0.00 | - | yes | Open |
| 1731 | 56.13265779172807 | -0.896517 | -20.2587 | 4 | 11 | 11 | 0.58 | 0.20 | - | yes | Open |
| 2014 | 59.56980002254264 | -1.09672 | -29.6864 | 4 | 18 | 0 | 0.00 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-19.407kcal/mol
Ligand efficiency (LE)
-0.7464kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-6.877
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
26HA
Physicochemical properties
Molecular weight
350.4Da
Lipinski: ≤ 500 Da
LogP (cLogP)
3.86
Lipinski: ≤ 5
Rotatable bonds
6
Conformational strain (MMFF94s)
Strain energy (ΔE)
13.92kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
98.38kcal/mol
Minimised FF energy
84.47kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.