Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Weak
Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-0.820 kcal/mol/HA)
✓ Good fit quality (FQ -7.83)
✗ High strain energy (19.7 kcal/mol)
✗ Geometry warnings
ℹ SASA not computed
Score
-23.779
kcal/mol
LE
-0.820
kcal/mol/HA
Fit Quality
-7.83
FQ (Leeson)
HAC
29
heavy atoms
MW
434
Da
LogP
4.59
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, strain 19.7 kcal/mol
Interaction summary
Collapsible panels
H-bonds 1
Hydrophobic 24
π–π 5
Clashes 14
Severe clashes 1
| Final rank | 6.9446623186933465 | Score | -23.779 |
|---|---|---|---|
| Inter norm | -0.830883 | Intra norm | 0.0109164 |
| Top1000 | no | Excluded | yes |
| Contacts | 12 | H-bonds | 1 |
| Artifact reason | excluded; geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 19.7 | ||
| Residues | A:ARG17;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:LYS198;A:MET233;A:NDP302;A:PHE113;A:SER111;A:TYR194;D:ARG287 | ||
Protein summary
308 residues
| Protein target | T04 | Atoms | 4210 |
|---|---|---|---|
| Residues | 308 | Chains | 3 |
| Residue summary | LEU:494; ALA:421; ARG:384; VAL:368; THR:295; TYR:231; SER:198; PRO:196; ILE:190; LYS:176; ASN:154; GLU:150; GLY:126; PHE:120; HIS:119; ASP:108 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 7PXX | Contacts | 19 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 8 |
| IFP residues | A:ARG17; A:ASP181; A:GLY225; A:HIS241; A:LEU188; A:LEU226; A:LEU229; A:LYS198; A:MET233; A:NDP302; A:PHE113; A:PRO115; A:SER111; A:SER112; A:SER227; A:TYR191; A:TYR194; A:VAL230; D:ARG287 | ||
| Current overlap | 12 | Native recall | 0.63 |
| Jaccard | 0.63 | RMSD | - |
| H-bond strict | 1 | Strict recall | 0.17 |
| H-bond same residue+role | 1 | Role recall | 0.20 |
| H-bond same residue | 1 | Residue recall | 0.20 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 183 | 2.6524973836816628 | -0.93453 | -26.7901 | 0 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 166 | 3.184967355927311 | -0.972893 | -27.5669 | 1 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 182 | 4.6125044483965 | -1.12904 | -30.7227 | 4 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 207 | 4.723685244314048 | -0.759738 | -18.573 | 0 | 19 | 0 | 0.00 | 0.00 | - | no | Open |
| 98 | 4.928706460321411 | -0.771316 | -21.0817 | 1 | 12 | 12 | 0.63 | 0.00 | - | no | Open |
| 167 | 5.865293042808408 | -0.980624 | -26.822 | 3 | 13 | 0 | 0.00 | 0.00 | - | yes | Open |
| 209 | 6.6762450716022075 | -0.722233 | -17.9379 | 1 | 19 | 0 | 0.00 | 0.00 | - | yes | Open |
| 97 | 6.758871973745717 | -1.00649 | -28.4867 | 1 | 12 | 12 | 0.63 | 0.20 | - | yes | Open |
| 99 | 6.9446623186933465 | -0.830883 | -23.779 | 1 | 12 | 12 | 0.63 | 0.20 | - | yes | Current |
| 181 | 7.556609259784765 | -1.16149 | -31.6116 | 3 | 18 | 0 | 0.00 | 0.00 | - | yes | Open |
| 208 | 10.990758953446976 | -0.742372 | -17.8666 | 0 | 18 | 0 | 0.00 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-23.779kcal/mol
Ligand efficiency (LE)
-0.8200kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-7.827
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
29HA
Physicochemical properties
Molecular weight
434.3Da
Lipinski: ≤ 500 Da
LogP (cLogP)
4.59
Lipinski: ≤ 5
Rotatable bonds
5
Conformational strain (MMFF94s)
Strain energy (ΔE)
19.73kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
-6.01kcal/mol
Minimised FF energy
-25.74kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.