FAIRMol

OHD_TbNat_130

Pose ID 6127 Pose 31

DB fairmolDocking pose analysis is being read from this database.
Molecular metrics status: missing
Molecular metrics have not been computed yet for this pose.
No cached metrics
T10
L. infantum R5P L. infantum
Ligand OHD_TbNat_130

3D complex viewer

Strict H-bonds Permissive H-bonds
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Weak Metrics pending
Promising but geometrically suspicious
Binding strong Geometry low Native strong SASA pending
Strain ΔE
50.6 kcal/mol
Protein clashes
9
Internal clashes
9
Native overlap
contact recall 0.76, Jaccard 0.68, H-bond role recall 0.36
Burial
2%
Reason: 9 protein-contact clashes, 9 internal clashes, strain 50.6 kcal/mol
strain ΔE 50.6 kcal/mol 9 protein-contact clashes 9 intramolecular clashes 97% of hydrophobic surface is solvent-exposed (35/36 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.

Interaction summary

HBA 10 HY 1 PI 0 CLASH 9

HBD/HBA · H-bonds (geometric)

HBD = ligand donates H · HBA = ligand accepts H · ~ = weak (≥110°). Mode: permissive. Residues: 4.

PI · π–π interactions

No pi · π–π interactions detected for this pose.

HY · Hydrophobic contacts

CLASH · Clashes

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: permissive.
Name6FXWContacts17
PoseOpen native poseHB0
IFP residues
ALA15 ARG116 ARG140 ARG144 ASN106 ASP13 CYS72 GLY73 GLY75 GLY77 HIS105 HIS14 HIS141 ILE76 LEU101 THR74 TYR49
Current overlap13Native recall0.76
Jaccard0.68RMSD-
HB strict6Strict recall0.46
HB same residue+role4HB role recall0.36
HB same residue5HB residue recall0.45

Protein summary

155 residues
Protein targetT10Atoms4590
Residues155Chains1
Residue summaryILE:494; ARG:384; ALA:360; VAL:352; LEU:304; GLU:300; THR:280; MET:272; LYS:220; ASP:216; TYR:210; HIS:204; GLY:182; SER:176; GLN:170; ASN:140

All stored poses for this docking hit

PoseFinal rankInter normScoreHBCTCT overlapCT recallHB role rec.RMSDExcluded
31 8.52144085992538 -0.47147 -14.1951 16 15 13 0.76 0.36 - yes Current

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
⚠ Not yet computed
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