Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Reject
Multiple quality flags — this pose should be deprioritised or discarded.
✓ Excellent LE (-0.901 kcal/mol/HA)
✓ Good fit quality (FQ -8.86)
✓ Good H-bonds (4 bonds)
✗ Very high strain energy (30.1 kcal/mol)
✗ Geometry warnings
✗ Protein contact clashes
ℹ SASA not computed
Score
-28.842
kcal/mol
LE
-0.901
kcal/mol/HA
Fit Quality
-8.86
FQ (Leeson)
HAC
32
heavy atoms
MW
569
Da
LogP
5.67
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, protein contact clashes, strain 30.1 kcal/mol
Interaction summary
Collapsible panels
H-bonds 4
Hydrophobic 24
π–π 1
Clashes 11
Severe clashes 0
| Final rank | 6.2634928611964575 | Score | -28.8424 |
|---|---|---|---|
| Inter norm | -0.933418 | Intra norm | 0.0320946 |
| Top1000 | no | Excluded | no |
| Contacts | 19 | H-bonds | 4 |
| Artifact reason | geometry warning; 13 clashes; 11 protein contact clashes; high strain Δ 31.9 | ||
| Residues | A:ALA10;A:ASP22;A:GLU31;A:ILE61;A:ILE8;A:LEU23;A:NAP201;A:PHE32;A:PHE35;A:PRO24;A:PRO26;A:PRO27;A:PRO62;A:SER60;A:THR137;A:THR57;A:TRP25;A:VAL116;A:VAL9 | ||
Protein summary
200 residues
| Protein target | T02 | Atoms | 3128 |
|---|---|---|---|
| Residues | 200 | Chains | 2 |
| Residue summary | LYS:374; LEU:361; GLU:240; VAL:224; ARG:192; PHE:180; ILE:171; PRO:168; ASN:140; SER:132; TYR:126; GLN:119; ASP:108; MET:102; THR:98; GLY:91 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 5SD8 | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 5 |
| IFP residues | A:ALA10; A:ASN65; A:ASP22; A:GLN36; A:GLU31; A:GLY117; A:GLY21; A:ILE61; A:ILE8; A:LEU23; A:LEU68; A:NAP201; A:PHE32; A:PHE35; A:PRO62; A:SER60; A:THR137; A:THR57; A:TYR122; A:VAL116; A:VAL9 | ||
| Current overlap | 15 | Native recall | 0.71 |
| Jaccard | 0.60 | RMSD | - |
| H-bond strict | 0 | Strict recall | 0.00 |
| H-bond same residue+role | 0 | Role recall | 0.00 |
| H-bond same residue | 0 | Residue recall | 0.00 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 2372 | 4.35739421635852 | -0.901914 | -30.5487 | 0 | 18 | 0 | 0.00 | 0.00 | - | no | Open |
| 1949 | 5.198949204153766 | -0.753505 | -21.1708 | 0 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 3256 | 6.2634928611964575 | -0.933418 | -28.8424 | 4 | 19 | 15 | 0.71 | 0.00 | - | no | Current |
| 3257 | 6.455832471385008 | -0.821266 | -26.9831 | 1 | 18 | 17 | 0.81 | 0.00 | - | no | Open |
| 2388 | 7.774704213900315 | -0.802717 | -23.7442 | 1 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 2370 | 8.183645678773447 | -0.882395 | -28.1484 | 2 | 15 | 0 | 0.00 | 0.00 | - | yes | Open |
| 3255 | 8.61269293886712 | -0.870669 | -27.425 | 0 | 18 | 17 | 0.81 | 0.00 | - | yes | Open |
| 2387 | 10.369232843195297 | -0.800208 | -24.2454 | 3 | 18 | 0 | 0.00 | 0.00 | - | yes | Open |
| 2389 | 12.046434953477675 | -0.81696 | -27.3427 | 3 | 19 | 0 | 0.00 | 0.00 | - | yes | Open |
| 2371 | 12.536784863271597 | -1.04002 | -28.6522 | 3 | 19 | 0 | 0.00 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-28.842kcal/mol
Ligand efficiency (LE)
-0.9013kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-8.864
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
32HA
Physicochemical properties
Molecular weight
568.9Da
Lipinski: ≤ 500 Da
LogP (cLogP)
5.67
Lipinski: ≤ 5
Rotatable bonds
6
Conformational strain (MMFF94s)
Strain energy (ΔE)
30.07kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
48.14kcal/mol
Minimised FF energy
18.07kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.