Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Reject
Multiple quality flags — this pose should be deprioritised or discarded.
✓ Excellent LE (-0.540 kcal/mol/HA)
✓ Good fit quality (FQ -5.40)
✓ Good H-bonds (4 bonds)
✗ Very high strain energy (25.5 kcal/mol)
✗ Geometry warnings
ℹ SASA not computed
Score
-18.352
kcal/mol
LE
-0.540
kcal/mol/HA
Fit Quality
-5.40
FQ (Leeson)
HAC
34
heavy atoms
MW
514
Da
LogP
2.43
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, strain 25.5 kcal/mol
Interaction summary
Collapsible panels
H-bonds 4
Hydrophobic 24
π–π 1
Clashes 16
Severe clashes 2
| Final rank | 11.162627935924707 | Score | -18.3515 |
|---|---|---|---|
| Inter norm | -0.691385 | Intra norm | 0.151635 |
| Top1000 | no | Excluded | yes |
| Contacts | 19 | H-bonds | 4 |
| Artifact reason | excluded; hard geometry fail; 1 severe clash; 2 protein clashes; high strain Δ 32.1 | ||
| Residues | A:ALA10;A:ASN65;A:ASP22;A:ILE61;A:ILE8;A:LEU23;A:LEU28;A:LEU68;A:NAP201;A:PHE32;A:PHE35;A:PRO26;A:PRO27;A:PRO62;A:THR57;A:TRP25;A:TYR122;A:VAL116;A:VAL9 | ||
Protein summary
200 residues
| Protein target | T02 | Atoms | 3128 |
|---|---|---|---|
| Residues | 200 | Chains | 2 |
| Residue summary | LYS:374; LEU:361; GLU:240; VAL:224; ARG:192; PHE:180; ILE:171; PRO:168; ASN:140; SER:132; TYR:126; GLN:119; ASP:108; MET:102; THR:98; GLY:91 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 5SD8 | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 5 |
| IFP residues | A:ALA10; A:ASN65; A:ASP22; A:GLN36; A:GLU31; A:GLY117; A:GLY21; A:ILE61; A:ILE8; A:LEU23; A:LEU68; A:NAP201; A:PHE32; A:PHE35; A:PRO62; A:SER60; A:THR137; A:THR57; A:TYR122; A:VAL116; A:VAL9 | ||
| Current overlap | 15 | Native recall | 0.71 |
| Jaccard | 0.60 | RMSD | - |
| H-bond strict | 0 | Strict recall | 0.00 |
| H-bond same residue+role | 0 | Role recall | 0.00 |
| H-bond same residue | 1 | Residue recall | 0.20 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 3206 | 4.948815307706374 | -0.684734 | -23.3162 | 1 | 18 | 17 | 0.81 | 0.00 | - | no | Open |
| 3703 | 5.418972328285989 | -0.620116 | -19.2603 | 3 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 2378 | 8.222562756337524 | -0.79336 | -24.4281 | 7 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 3702 | 7.61940434743973 | -0.745467 | -24.4793 | 4 | 14 | 0 | 0.00 | 0.00 | - | yes | Open |
| 2376 | 8.192807940647587 | -0.845605 | -25.0189 | 7 | 18 | 0 | 0.00 | 0.00 | - | yes | Open |
| 2379 | 10.032734323736642 | -0.838117 | -20.277 | 11 | 16 | 0 | 0.00 | 0.00 | - | yes | Open |
| 3207 | 10.811693932797503 | -0.662537 | -18.9743 | 1 | 15 | 11 | 0.52 | 0.20 | - | yes | Open |
| 3704 | 11.093703929308662 | -0.700711 | -22.7493 | 4 | 13 | 0 | 0.00 | 0.00 | - | yes | Open |
| 3205 | 11.162627935924707 | -0.691385 | -18.3515 | 4 | 19 | 15 | 0.71 | 0.00 | - | yes | Current |
| 3701 | 59.59594328498775 | -0.634484 | -20.5254 | 2 | 14 | 0 | 0.00 | 0.00 | - | yes | Open |
| 3204 | 60.01081702260929 | -0.798969 | -26.4833 | 1 | 19 | 18 | 0.86 | 0.00 | - | yes | Open |
| 2377 | 62.61832617806778 | -0.717906 | -21.9928 | 12 | 17 | 0 | 0.00 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-18.352kcal/mol
Ligand efficiency (LE)
-0.5398kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-5.401
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
34HA
Physicochemical properties
Molecular weight
513.6Da
Lipinski: ≤ 500 Da
LogP (cLogP)
2.43
Lipinski: ≤ 5
Rotatable bonds
4
Conformational strain (MMFF94s)
Strain energy (ΔE)
25.45kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
27.03kcal/mol
Minimised FF energy
1.58kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.