Molecular metrics status: queued
Pose metrics recompute is queued in the background.
Metrics cached · SASA missing
3D complex viewer
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Weak
No SASA yet
Weak or marginal quality
Binding strong
Geometry medium
Native mixed
SASA missing
Strain ΔE
13.0 kcal/mol
Protein clashes
3
Internal clashes
3
Native overlap
contact recall 0.47, Jaccard 0.39, H-bond role recall 0.40
Reason: no major geometry red flags detected
3 protein-contact clashes
3 intramolecular clashes
100% of hydrophobic surface is solvent-exposed (16/16 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Interaction summary
HB 8
HY 0
PI 0
CLASH 3
⚠ Exposure 100%
Interaction summary
HB 8
HY 0
PI 0
CLASH 3
⚠ Exposure 100%
Solvent-exposed hydrophobic surface — desolvation penalty likely
100% of hydrophobic surface is solvent-exposed (16/16 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Non-polar atoms 16
Buried (contacted) 0
Exposed 16
LogP 1.71
H-bonds 8
Exposed fragments:
phenyl (6/6 atoms exposed)phenyl (6/7 atoms exposed)phenyl (6/6 atoms exposed)
| Final rank | 3.890 | Score | -19.093 |
|---|---|---|---|
| Inter norm | -0.964 | Intra norm | 0.054 |
| Top1000 | no | Excluded | no |
| Contacts | 10 | H-bonds | 8 |
| Artifact reason | geometry warning; 9 clashes; 9 protein contact clashes; moderate strain Δ 13.0 | ||
| Residues |
ARG242
ARG337
ASP243
ASP385
GLU384
LEU339
PHE383
PRO338
THR241
VAL336
| ||
Protein summary
398 residues
| Protein target | T14 | Atoms | 6140 |
|---|---|---|---|
| Residues | 398 | Chains | 1 |
| Residue summary | VAL:592; LEU:513; LYS:484; ARG:432; PHE:420; ILE:418; ASP:349; THR:322; TYR:315; PRO:308; GLU:301; ALA:290; SER:253; GLY:217; ASN:210; GLN:170 | ||
Receptor context
1 kept / 0 excluded
Receptor context filtering: interactions and SASA are computed against protein atoms plus allowed cofactors/ions. Native ligand-like HETATM partners are excluded from scoring.
Kept context 1
Excluded HETATM 0
Kept cofactors / ions
A:ORX602
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 1NJJ | Contacts | 15 |
|---|---|---|---|
| Pose | Open native pose | HB | 0 |
| IFP residues |
ARG22
ARG242
ARG337
ARG342
ASP243
ASP385
GLN341
GLU384
LEU25
LEU339
LEU382
PRO340
PRO344
SER282
THR241
| ||
| Current overlap | 7 | Native recall | 0.47 |
| Jaccard | 0.39 | RMSD | - |
| HB strict | 1 | Strict recall | 0.17 |
| HB same residue+role | 2 | HB role recall | 0.40 |
| HB same residue | 2 | HB residue recall | 0.40 |
HB · H-bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
PI · π–π interactions
No pi · π–π interactions detected for this pose.
HY · Hydrophobic contacts
No hy · hydrophobic contacts detected for this pose.
CLASH · Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | CT | CT overlap | CT recall | HB role rec. | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1344 | 2.5443947975765107 | -1.54324 | -27.1699 | 8 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 1348 | 2.6800138834403002 | -1.49207 | -26.8855 | 8 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 1346 | 3.5110347854565767 | -1.4235 | -26.1031 | 6 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 1645 | 3.890009561623924 | -0.963518 | -19.0926 | 8 | 10 | 7 | 0.47 | 0.40 | - | no | Current |
| 1647 | 4.024186411005877 | -0.973604 | -20.435 | 8 | 10 | 7 | 0.47 | 0.40 | - | no | Open |
| 1648 | 4.434670916339291 | -1.0631 | -21.7956 | 4 | 11 | 6 | 0.40 | 0.20 | - | no | Open |
| 1644 | 4.829160932609852 | -1.07661 | -18.3166 | 6 | 10 | 6 | 0.40 | 0.20 | - | no | Open |
| 1643 | 5.240000579556822 | -1.00104 | -18.0378 | 7 | 8 | 7 | 0.47 | 0.40 | - | yes | Open |
| 1649 | 5.407579981260749 | -1.0637 | -18.4724 | 7 | 8 | 7 | 0.47 | 0.40 | - | yes | Open |
| 1646 | 5.483927099369852 | -1.0352 | -18.8814 | 6 | 9 | 8 | 0.53 | 0.40 | - | yes | Open |
| 1347 | 5.660898225771761 | -1.36294 | -24.4507 | 3 | 14 | 0 | 0.00 | 0.00 | - | yes | Open |
| 1345 | 5.8260709205991175 | -1.27364 | -21.6731 | 3 | 13 | 0 | 0.00 | 0.00 | - | yes | Open |
| 1650 | 6.6232204877297525 | -1.0811 | -20.1761 | 6 | 10 | 9 | 0.60 | 0.40 | - | yes | Open |
| 1349 | 8.182515928380367 | -1.21196 | -23.5475 | 7 | 11 | 0 | 0.00 | 0.00 | - | yes | Open |
Molecular metrics
RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Molecular metrics have not been computed for this pose yet. This page now reads only cached values; use a background recompute when you want fresh metrics without slowing the UI.