Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Reject
Multiple quality flags — this pose should be deprioritised or discarded.
✓ Excellent LE (-0.505 kcal/mol/HA)
✓ Good fit quality (FQ -5.40)
✓ Strong H-bond network (9 bonds)
✗ Very high strain energy (70.4 kcal/mol)
✗ Geometry warnings
ℹ SASA not computed
Score
-22.237
kcal/mol
LE
-0.505
kcal/mol/HA
Fit Quality
-5.40
FQ (Leeson)
HAC
44
heavy atoms
MW
611
Da
LogP
-1.02
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, strain 70.4 kcal/mol
Interaction summary
Collapsible panels
H-bonds 9
Hydrophobic 24
π–π 0
Clashes 9
Severe clashes 2
| Final rank | 57.32401209749175 | Score | -22.2374 |
|---|---|---|---|
| Inter norm | -0.578951 | Intra norm | 0.0735566 |
| Top1000 | no | Excluded | yes |
| Contacts | 21 | H-bonds | 9 |
| Artifact reason | excluded; geometry warning; 13 clashes; 2 protein clashes | ||
| Residues | A:ALA10;A:ARG29;A:ASN65;A:ASP22;A:GLU31;A:GLY117;A:GLY21;A:ILE8;A:LEU23;A:LEU28;A:NAP201;A:PHE32;A:PHE35;A:PRO27;A:PRO62;A:SER60;A:THR57;A:TRP25;A:TYR122;A:VAL116;A:VAL9 | ||
Protein summary
200 residues
| Protein target | T02 | Atoms | 3128 |
|---|---|---|---|
| Residues | 200 | Chains | 2 |
| Residue summary | LYS:374; LEU:361; GLU:240; VAL:224; ARG:192; PHE:180; ILE:171; PRO:168; ASN:140; SER:132; TYR:126; GLN:119; ASP:108; MET:102; THR:98; GLY:91 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 5SD8 | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 5 |
| IFP residues | A:ALA10; A:ASN65; A:ASP22; A:GLN36; A:GLU31; A:GLY117; A:GLY21; A:ILE61; A:ILE8; A:LEU23; A:LEU68; A:NAP201; A:PHE32; A:PHE35; A:PRO62; A:SER60; A:THR137; A:THR57; A:TYR122; A:VAL116; A:VAL9 | ||
| Current overlap | 17 | Native recall | 0.81 |
| Jaccard | 0.68 | RMSD | - |
| H-bond strict | 3 | Strict recall | 0.60 |
| H-bond same residue+role | 4 | Role recall | 0.80 |
| H-bond same residue | 4 | Residue recall | 0.80 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
No π–π interactions detected for this pose.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 166 | 7.8000973962403855 | -0.405254 | -9.34545 | 4 | 20 | 0 | 0.00 | 0.00 | - | no | Open |
| 167 | 8.37163858512793 | -0.345489 | -14.5393 | 5 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 236 | 9.659434172653093 | -0.476054 | -16.9073 | 5 | 18 | 15 | 0.71 | 0.60 | - | no | Open |
| 239 | 9.586796480250854 | -0.544756 | -25.3802 | 7 | 20 | 15 | 0.71 | 0.80 | - | yes | Open |
| 165 | 9.922099206829781 | -0.57743 | -22.1226 | 7 | 21 | 0 | 0.00 | 0.00 | - | yes | Open |
| 238 | 10.408757030452048 | -0.500862 | -22.7945 | 3 | 21 | 17 | 0.81 | 0.40 | - | yes | Open |
| 237 | 57.32401209749175 | -0.578951 | -22.2374 | 9 | 21 | 17 | 0.81 | 0.80 | - | yes | Current |
| 164 | 58.48174261162451 | -0.401533 | -11.3938 | 9 | 21 | 0 | 0.00 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-22.237kcal/mol
Ligand efficiency (LE)
-0.5054kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-5.400
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
44HA
Physicochemical properties
Molecular weight
610.9Da
Lipinski: ≤ 500 Da
LogP (cLogP)
-1.02
Lipinski: ≤ 5
Rotatable bonds
10
Conformational strain (MMFF94s)
Strain energy (ΔE)
70.40kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
181.71kcal/mol
Minimised FF energy
111.31kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.