FAIRMol

OHD_TbNat_133

Pose ID 20801 Compound 2138 Pose 285

DB Docking_panel_21Docking pose analysis is being read from this database.
Molecular metrics status: queued
Pose metrics recompute is queued in the background.
Metrics cached · SASA missing

py3Dmol interaction viewer

Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Strict H-bonds Permissive H-bonds
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: mixed
Ligand efficiency: weak
Geometry reliability: low
Reason: geometry warning, clashes, protein contact clashes

Interaction summary

Collapsible panels
H-bonds 4 Hydrophobic 20 π–π 4 Clashes 8 Severe clashes 0
Final rank4.249418341164932Score-14.6771
Inter norm-0.65245Intra norm0.0653646
Top1000noExcludedno
Contacts15H-bonds4
Artifact reasongeometry warning; 9 clashes; 8 protein contact clashes; moderate strain Δ 18.3
ResiduesA:ALA40;A:GLN124;A:GLY39;A:HIS144;A:ILE126;A:PHE189;A:PHE190;A:PHE51;A:PHE74;A:SER218;A:THR217;A:THR71;A:VAL187;A:VAL188;A:VAL221

Protein summary

287 residues
Protein targetT11Atoms4391
Residues287Chains1
Residue summaryLEU:627; ARG:432; VAL:384; GLU:316; PHE:300; ILE:285; ALA:260; PRO:238; HIS:187; ASP:157; LYS:154; SER:154; THR:154; GLY:147; ASN:140; TYR:126

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
Name5OL0Contacts18
PoseOpen native poseH-bonds5
IFP residuesA:ASN193; A:GLN220; A:GLU192; A:GLY191; A:HIS144; A:HIS222; A:ILE126; A:LEU194; A:LEU226; A:PHE189; A:PHE190; A:PHE199; A:PHE74; A:PRO223; A:THR71; A:VAL187; A:VAL188; A:VAL221
Current overlap9Native recall0.50
Jaccard0.38RMSD-
H-bond strict1Strict recall0.20
H-bond same residue+role1Role recall0.20
H-bond same residue1Residue recall0.25

Hydrogen bonds

Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.

π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

Hydrophobic contacts

Clashes

All stored poses for this docking hit

PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB role recallRMSDExcluded
297 3.2211738431491166 -0.864738 -18.5718 9 14 0 0.00 0.00 - no Open
308 3.5087234376880794 -0.630012 -14.5807 4 8 0 0.00 0.00 - no Open
306 4.057646317453305 -0.887122 -20.4622 9 16 0 0.00 0.00 - no Open
305 4.092809376413224 -0.82462 -18.5825 9 14 0 0.00 0.00 - no Open
304 4.225145166630216 -0.708658 -15.5749 6 9 0 0.00 0.00 - no Open
285 4.249418341164932 -0.65245 -14.6771 4 15 9 0.50 0.20 - no Current
310 4.50626898358551 -0.687702 -16.3842 6 9 0 0.00 0.00 - no Open
302 4.785093596347734 -0.806011 -18.425 8 10 0 0.00 0.00 - no Open
305 4.922064754170995 -0.699833 -16.5693 7 9 0 0.00 0.00 - no Open
288 4.554390857974641 -0.639525 -14.7458 3 16 9 0.50 0.20 - yes Open
281 4.776109144064239 -0.742629 -17.3765 4 15 9 0.50 0.20 - yes Open
301 5.037608024330254 -0.817933 -17.3255 6 9 0 0.00 0.00 - yes Open
299 5.2574366539639055 -0.956248 -23.4014 7 17 0 0.00 0.00 - yes Open
307 5.280946610901014 -0.836887 -20.4301 7 17 0 0.00 0.00 - yes Open
298 5.6047971296873405 -0.920587 -22.0862 8 16 0 0.00 0.00 - yes Open
306 5.750751610476967 -0.790839 -18.0037 10 10 0 0.00 0.00 - yes Open
283 6.752448489660804 -0.904092 -22.1352 10 12 12 0.67 0.60 - yes Open
311 6.809373492885872 -0.694931 -16.7778 4 11 0 0.00 0.00 - yes Open
303 6.912699788412837 -0.932883 -18.8898 5 11 0 0.00 0.00 - yes Open
279 6.974694134065902 -0.963395 -22.8184 10 12 11 0.61 0.60 - yes Open
280 7.346743268228622 -0.86208 -19.3589 7 12 12 0.67 0.40 - yes Open
284 7.59453275720647 -0.837326 -19.029 6 12 12 0.67 0.40 - yes Open
287 7.716124711807044 -0.845206 -20.9657 9 13 12 0.67 0.60 - yes Open
302 7.943369928984632 -0.862673 -20.8085 8 14 0 0.00 0.00 - yes Open
277 8.513297315555713 -0.761015 -16.1742 5 15 9 0.50 0.20 - yes Open
304 10.10650623057056 -0.85949 -21.2079 8 12 0 0.00 0.00 - yes Open
301 10.533268992998238 -0.793389 -19.6362 7 12 0 0.00 0.00 - yes Open
300 55.80705810478515 -0.936674 -22.8883 8 15 0 0.00 0.00 - yes Open
308 55.85755710342858 -0.885175 -21.8304 9 15 0 0.00 0.00 - yes Open
307 56.48257294641266 -0.752595 -18.7247 6 10 0 0.00 0.00 - yes Open
309 56.66100439252402 -0.724033 -17.5106 4 10 0 0.00 0.00 - yes Open
300 57.7419765176045 -0.823352 -19.6883 6 10 0 0.00 0.00 - yes Open
278 58.35124707003621 -0.928095 -21.3004 9 10 10 0.56 0.60 - yes Open
282 59.534966679708056 -0.904325 -21.9167 8 10 10 0.56 0.60 - yes Open
286 60.49135001113572 -0.746427 -16.5104 8 11 11 0.61 0.60 - yes Open
303 61.532738818960155 -0.889334 -21.659 8 14 0 0.00 0.00 - yes Open

Molecular metrics

FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
⚠ Not yet computed
Molecular metrics have not been computed for this pose yet. This page now reads only cached values; use a background recompute when you want fresh metrics without slowing the UI.