FAIRMol

Z49549408

Pose ID 19214 Compound 902 Pose 1408

DB Docking_panel_21Docking pose analysis is being read from this database.
Molecular metrics status: queued
Pose metrics recompute is queued in the background.
Metrics cached · SASA missing
T10
Type B ribose-5-phosphate isomerase (RpiB) Leishmania infantum
Ligand Z49549408
PDB6FXW

3D complex viewer

Strict H-bonds Permissive H-bonds
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Promising No SASA yet
Promising and worth follow-up
Binding strong Geometry medium Native strong SASA missing
Strain ΔE
not computed
Protein clashes
3
Internal clashes
3
Native overlap
contact recall 1.00, Jaccard 1.00, H-bond role recall 0.36
Burial
92%
Reason: no major geometry red flags detected
3 protein-contact clashes 3 intramolecular clashes

Interaction summary

HB 8 HY 2 PI 2 CLASH 3
Final rank9.102Score-17.682
Inter norm-1.053Intra norm0.122
Top1000noExcludedyes
Contacts17H-bonds8
Artifact reasonexcluded; geometry warning; 8 clashes; 4 protein clashes
Residues
ALA15 ARG116 ARG140 ARG144 ASN106 ASP13 CYS72 GLY73 GLY75 GLY77 HIS105 HIS14 HIS141 ILE76 LEU101 THR74 TYR49

Protein summary

155 residues
Protein targetT10Atoms4590
Residues155Chains1
Residue summaryILE:494; ARG:384; ALA:360; VAL:352; LEU:304; GLU:300; THR:280; MET:272; LYS:220; ASP:216; TYR:210; HIS:204; GLY:182; SER:176; GLN:170; ASN:140

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
Name6FXWContacts17
PoseOpen native poseHB0
IFP residues
ALA15 ARG116 ARG140 ARG144 ASN106 ASP13 CYS72 GLY73 GLY75 GLY77 HIS105 HIS14 HIS141 ILE76 LEU101 THR74 TYR49
Current overlap17Native recall1.00
Jaccard1.00RMSD-
HB strict3Strict recall0.23
HB same residue+role4HB role recall0.36
HB same residue5HB residue recall0.45

HB · H-bonds

Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.

PI · π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

HY · Hydrophobic contacts

CLASH · Clashes

All stored poses for this docking hit

PoseFinal rankInter normScoreHBCTCT overlapCT recallHB role rec.RMSDExcluded
1407 2.4625749685866216 -1.11741 -17.1394 6 14 13 0.76 0.36 - no Open
1409 2.776678858912309 -1.0458 -19.7622 8 13 12 0.71 0.27 - no Open
1730 3.0960118747393324 -1.12971 -18.6955 6 14 0 0.00 0.00 - no Open
1540 3.627465031525345 -1.32141 -16.8737 8 10 0 0.00 0.00 - no Open
975 3.805268918581187 -1.29961 -22.2216 5 10 0 0.00 0.00 - no Open
1737 4.248180277766373 -1.18981 -20.2759 7 16 0 0.00 0.00 - no Open
1735 4.255528952590643 -1.05892 -20.6977 7 16 0 0.00 0.00 - no Open
1538 4.455295501347216 -1.22865 -17.5208 7 10 0 0.00 0.00 - no Open
1534 4.539884544135903 -0.939939 -14.4739 7 9 0 0.00 0.00 - no Open
1532 4.930316702360678 -1.25866 -18.0955 7 10 0 0.00 0.00 - no Open
1732 4.711483317252592 -1.1992 -19.3909 9 15 0 0.00 0.00 - yes Open
967 4.818202332657728 -1.23241 -17.7527 5 11 0 0.00 0.00 - yes Open
1539 4.902295929757719 -1.2282 -19.9476 9 11 0 0.00 0.00 - yes Open
1734 5.103799083983336 -1.08859 -19.042 10 15 0 0.00 0.00 - yes Open
968 5.2183379039221185 -1.27106 -21.279 4 11 0 0.00 0.00 - yes Open
1736 5.241225146046268 -1.25046 -12.4766 9 14 0 0.00 0.00 - yes Open
1728 5.878697447266207 -1.22688 -20.2527 8 15 0 0.00 0.00 - yes Open
1410 6.375380320201811 -0.831467 -9.41655 7 13 13 0.76 0.27 - yes Open
1729 6.413487345342728 -1.28583 -23.0255 8 14 0 0.00 0.00 - yes Open
970 6.622115770097823 -1.06519 -20.2285 3 11 0 0.00 0.00 - yes Open
1535 6.735693126980601 -1.07976 -17.816 6 12 0 0.00 0.00 - yes Open
1403 6.757055406283792 -1.23151 -19.003 7 14 14 0.82 0.27 - yes Open
1533 6.821573892701443 -1.38191 -21.767 5 13 0 0.00 0.00 - yes Open
1411 6.908365173494188 -1.324 -15.5083 10 14 14 0.82 0.45 - yes Open
1733 7.121877136386508 -1.11826 -20.6865 6 15 0 0.00 0.00 - yes Open
969 7.139189622390264 -1.25255 -21.2701 7 10 0 0.00 0.00 - yes Open
1536 7.22608008345386 -1.25222 -19.8381 8 10 0 0.00 0.00 - yes Open
976 7.314232934411427 -1.25071 -21.9728 4 12 0 0.00 0.00 - yes Open
1541 7.3226227624616405 -1.25353 -20.6531 9 11 0 0.00 0.00 - yes Open
1412 7.356448389414431 -1.45975 -25.5076 10 13 12 0.71 0.45 - yes Open
974 7.443113658378174 -1.087 -17.5461 5 13 0 0.00 0.00 - yes Open
1731 7.845538713315338 -1.27388 -21.8943 11 14 0 0.00 0.00 - yes Open
972 8.065574051397995 -1.31937 -22.3757 8 12 0 0.00 0.00 - yes Open
1405 8.532090268684003 -1.23801 -18.9195 10 14 14 0.82 0.36 - yes Open
971 8.587825449594714 -1.24614 -16.8635 6 12 0 0.00 0.00 - yes Open
1404 8.763868153241658 -1.20652 -21.3875 8 17 14 0.82 0.27 - yes Open
1408 9.102339033923183 -1.05313 -17.6824 8 17 17 1.00 0.36 - yes Current
1537 9.11692321098314 -1.25016 -20.2207 7 13 0 0.00 0.00 - yes Open
973 10.123235766659107 -1.1868 -19.8511 7 11 0 0.00 0.00 - yes Open
1406 10.277603036147854 -0.978372 -10.4977 6 16 16 0.94 0.18 - yes Open

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
⚠ Not yet computed
Molecular metrics have not been computed for this pose yet. This page now reads only cached values; use a background recompute when you want fresh metrics without slowing the UI.