Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Weak
Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-1.024 kcal/mol/HA)
✓ Good fit quality (FQ -8.57)
✓ Strong H-bond network (8 bonds)
✗ High strain energy (17.1 kcal/mol)
✗ Geometry warnings
ℹ SASA not computed
Score
-20.488
kcal/mol
LE
-1.024
kcal/mol/HA
Fit Quality
-8.57
FQ (Leeson)
HAC
20
heavy atoms
MW
313
Da
LogP
0.64
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, strain 17.1 kcal/mol
Interaction summary
Collapsible panels
H-bonds 8
Hydrophobic 24
π–π 1
Clashes 7
Severe clashes 1
| Final rank | 4.220272913274842 | Score | -20.4885 |
|---|---|---|---|
| Inter norm | -1.04358 | Intra norm | 0.0191572 |
| Top1000 | no | Excluded | yes |
| Contacts | 17 | H-bonds | 8 |
| Artifact reason | excluded; geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 17.8 | ||
| Residues | A:ALA34;A:ASP54;A:ILE160;A:ILE47;A:LEU90;A:LEU97;A:MET55;A:MET82;A:NDP301;A:PHE58;A:THR184;A:THR86;A:TRP49;A:TYR166;A:TYR57;A:VAL32;A:VAL33 | ||
Protein summary
223 residues
| Protein target | T06 | Atoms | 3452 |
|---|---|---|---|
| Residues | 223 | Chains | 1 |
| Residue summary | ARG:408; VAL:352; LYS:308; LEU:304; PRO:238; ILE:209; GLU:195; THR:182; SER:176; ALA:160; PHE:140; ASN:126; GLY:126; ASP:108; GLN:85; NDP:74 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 8RHT | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 6 |
| IFP residues | A:ALA34; A:ASP54; A:HIS182; A:ILE160; A:ILE47; A:LEU90; A:LEU97; A:MET55; A:NDP301; A:PHE233; A:PHE58; A:PHE94; A:PRO91; A:SER89; A:THR184; A:THR86; A:TRP49; A:TYR166; A:TYR57; A:VAL32; A:VAL33 | ||
| Current overlap | 16 | Native recall | 0.76 |
| Jaccard | 0.73 | RMSD | - |
| H-bond strict | 3 | Strict recall | 0.60 |
| H-bond same residue+role | 2 | Role recall | 0.50 |
| H-bond same residue | 4 | Residue recall | 1.00 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 741 | 2.4431014686266868 | -1.15426 | -21.7801 | 8 | 16 | 15 | 0.71 | 0.50 | - | no | Open |
| 2827 | 2.8528809983601167 | -1.28962 | -25.9234 | 9 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 740 | 2.9118932102520394 | -1.1627 | -22.7243 | 10 | 17 | 16 | 0.76 | 0.50 | - | no | Open |
| 2203 | 3.067803694016666 | -1.4959 | -28.3343 | 10 | 14 | 1 | 0.05 | 0.00 | - | no | Open |
| 742 | 3.5843619745137447 | -1.12529 | -21.3684 | 7 | 15 | 15 | 0.71 | 0.25 | - | no | Open |
| 2829 | 3.699553722845288 | -1.11771 | -20.3646 | 8 | 14 | 0 | 0.00 | 0.00 | - | no | Open |
| 2828 | 3.8785774657049177 | -1.1001 | -20.2857 | 5 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 743 | 3.803476724397061 | -1.12629 | -21.9808 | 9 | 16 | 15 | 0.71 | 0.50 | - | yes | Open |
| 744 | 4.220272913274842 | -1.04358 | -20.4885 | 8 | 17 | 16 | 0.76 | 0.50 | - | yes | Current |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-20.488kcal/mol
Ligand efficiency (LE)
-1.0244kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-8.573
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
20HA
Physicochemical properties
Molecular weight
313.4Da
Lipinski: ≤ 500 Da
LogP (cLogP)
0.64
Lipinski: ≤ 5
Rotatable bonds
3
Conformational strain (MMFF94s)
Strain energy (ΔE)
17.14kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
3.84kcal/mol
Minimised FF energy
-13.30kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.