Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Weak
Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-1.015 kcal/mol/HA)
✓ Good fit quality (FQ -9.10)
✓ Strong H-bond network (6 bonds)
✗ High strain energy (19.6 kcal/mol)
✗ Geometry warnings
✗ Protein contact clashes
ℹ SASA not computed
Score
-24.364
kcal/mol
LE
-1.015
kcal/mol/HA
Fit Quality
-9.10
FQ (Leeson)
HAC
24
heavy atoms
MW
325
Da
LogP
2.42
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, protein contact clashes, strain 19.6 kcal/mol
Interaction summary
Collapsible panels
H-bonds 6
Hydrophobic 24
π–π 3
Clashes 9
Severe clashes 0
| Final rank | 5.286565630587863 | Score | -24.3637 |
|---|---|---|---|
| Inter norm | -0.979626 | Intra norm | -0.0355293 |
| Top1000 | no | Excluded | no |
| Contacts | 19 | H-bonds | 6 |
| Artifact reason | geometry warning; 14 clashes; 9 protein contact clashes; high strain Δ 23.2 | ||
| Residues | A:ALA34;A:ASP54;A:GLU50;A:HIS182;A:ILE160;A:ILE47;A:LEU90;A:LEU97;A:MET55;A:NDP301;A:PHE58;A:PHE94;A:PRO91;A:THR184;A:THR86;A:TYR166;A:TYR57;A:VAL32;A:VAL33 | ||
Protein summary
223 residues
| Protein target | T06 | Atoms | 3452 |
|---|---|---|---|
| Residues | 223 | Chains | 1 |
| Residue summary | ARG:408; VAL:352; LYS:308; LEU:304; PRO:238; ILE:209; GLU:195; THR:182; SER:176; ALA:160; PHE:140; ASN:126; GLY:126; ASP:108; GLN:85; NDP:74 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 8RHT | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 6 |
| IFP residues | A:ALA34; A:ASP54; A:HIS182; A:ILE160; A:ILE47; A:LEU90; A:LEU97; A:MET55; A:NDP301; A:PHE233; A:PHE58; A:PHE94; A:PRO91; A:SER89; A:THR184; A:THR86; A:TRP49; A:TYR166; A:TYR57; A:VAL32; A:VAL33 | ||
| Current overlap | 18 | Native recall | 0.86 |
| Jaccard | 0.82 | RMSD | - |
| H-bond strict | 4 | Strict recall | 0.80 |
| H-bond same residue+role | 4 | Role recall | 1.00 |
| H-bond same residue | 4 | Residue recall | 1.00 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 208 | 2.8310249964429723 | -1.10127 | -26.7452 | 10 | 18 | 1 | 0.05 | 0.00 | - | no | Open |
| 209 | 2.9036950248110562 | -1.07961 | -24.8487 | 10 | 16 | 1 | 0.05 | 0.00 | - | no | Open |
| 248 | 3.044195362666372 | -1.51122 | -37.7581 | 8 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 249 | 3.078881408016236 | -1.43894 | -36.0333 | 6 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 250 | 3.4507517384190836 | -1.54266 | -37.9275 | 8 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 210 | 3.6122169202787617 | -1.00823 | -24.9002 | 5 | 16 | 1 | 0.05 | 0.00 | - | no | Open |
| 250 | 4.7961851719185855 | -0.986967 | -24.5766 | 3 | 18 | 17 | 0.81 | 0.75 | - | no | Open |
| 252 | 4.879258263872926 | -0.992095 | -25.0548 | 6 | 18 | 17 | 0.81 | 1.00 | - | no | Open |
| 251 | 5.286565630587863 | -0.979626 | -24.3637 | 6 | 19 | 18 | 0.86 | 1.00 | - | no | Current |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-24.364kcal/mol
Ligand efficiency (LE)
-1.0152kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-9.098
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
24HA
Physicochemical properties
Molecular weight
325.4Da
Lipinski: ≤ 500 Da
LogP (cLogP)
2.42
Lipinski: ≤ 5
Rotatable bonds
5
Conformational strain (MMFF94s)
Strain energy (ΔE)
19.64kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
41.97kcal/mol
Minimised FF energy
22.33kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.