Molecular metrics status: missing
Molecular metrics have not been computed yet for this pose.
No cached metrics
3D complex viewer
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Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Weak
Metrics pending
Promising but geometrically suspicious
Binding strong
Geometry low
Native strong
SASA pending
Strain ΔE
51.9 kcal/mol
Protein clashes
2
Internal clashes
2
Native overlap
contact recall 0.74, Jaccard 0.67, H-bond role recall 0.71
Reason: strain 51.9 kcal/mol
strain ΔE 51.9 kcal/mol
2 protein-contact clashes
Interaction summary
HB 11
HY 10
PI 3
CLASH 2
Interaction summary
HB 11
HY 10
PI 3
CLASH 2
| Final rank | 7.506 | Score | -33.192 |
|---|---|---|---|
| Inter norm | -1.068 | Intra norm | -0.038 |
| Top1000 | no | Excluded | yes |
| Contacts | 16 | H-bonds | 11 |
| Artifact reason | excluded; geometry warning; 12 clashes; 6 protein clashes; high strain Δ 51.9 | ||
| Residues |
ALA67
ARG277
ASP332
GLU274
GLY199
GLY236
GLY237
GLY276
HIS197
HIS333
LYS69
PRO275
SER200
TYR278
TYR331
TYR389
| ||
Protein summary
411 residues
| Protein target | T13 | Atoms | 6340 |
|---|---|---|---|
| Residues | 411 | Chains | 1 |
| Residue summary | VAL:624; LEU:551; LYS:506; ARG:480; PHE:460; ILE:418; ASP:348; GLU:332; THR:322; TYR:315; PRO:308; ALA:290; SER:264; GLY:224; ASN:210; GLN:170 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 1F3T | Contacts | 19 |
|---|---|---|---|
| Pose | Open native pose | HB | 0 |
| IFP residues |
ALA111
ALA67
ARG154
ARG277
ASP332
ASP88
CYS70
GLU274
GLY236
GLY237
GLY276
HIS197
LYS69
PHE238
PRO275
SER200
TYR278
TYR331
TYR389
| ||
| Current overlap | 14 | Native recall | 0.74 |
| Jaccard | 0.67 | RMSD | - |
| HB strict | 6 | Strict recall | 0.67 |
| HB same residue+role | 5 | HB role recall | 0.71 |
| HB same residue | 6 | HB residue recall | 0.86 |
HB · H-bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
PI · π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
HY · Hydrophobic contacts
CLASH · Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | CT | CT overlap | CT recall | HB role rec. | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 559 | 7.506221325637156 | -1.06814 | -33.1924 | 11 | 16 | 14 | 0.74 | 0.71 | - | yes | Current |
Molecular metrics
RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Molecular metrics have not been computed for this pose yet. This page now reads only cached values; use a background recompute when you want fresh metrics without slowing the UI.