Docking pose detail

py3Dmol interaction viewer

Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.

Strict H-bonds Permissive H-bonds

Molecular report

Full metrics ↗

Weak Marginal quality. Consider only alongside better-scoring alternatives.

✓ Excellent LE (-1.273 kcal/mol/HA) ✓ Good fit quality (FQ -10.20) ✗ Moderate strain (7.9 kcal/mol) ✗ No H-bonds detected ✗ Geometry warnings ✗ Protein contact clashes ℹ SASA not computed

Score

-22.914

kcal/mol

-1.273

kcal/mol/HA

Fit Quality

-10.20

FQ (Leeson)

HAC

heavy atoms

235

LogP

3.24

cLogP

Strain ΔE

7.9 kcal/mol

SASA buried

computing…

Interaction summary

Collapsible panels

H-bonds 0 Hydrophobic 22 π–π 3 Clashes 3 Severe clashes 0

Final rank	1.939656648821493	Score	-22.9142
Inter norm	-1.21906	Intra norm	-0.0539554
Top1000	no	Excluded	no
Contacts	10	H-bonds	0
Artifact reason	geometry warning; 10 clashes; 3 protein contact clashes
Residues	A:ARG17;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:NDP302;A:PHE113;A:TYR191;A:TYR194;D:ARG287

Protein summary

308 residues

Protein target	T04	Atoms	4210
Residues	308	Chains	3
Residue summary	LEU:494; ALA:421; ARG:384; VAL:368; THR:295; TYR:231; SER:198; PRO:196; ILE:190; LYS:176; ASN:154; GLU:150; GLY:126; PHE:120; HIS:119; ASP:108

Native ligand reference

★ reference

Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.

Name	7PXX	Contacts	19
Pose	Open native pose	H-bonds	8
IFP residues	A:ARG17; A:ASP181; A:GLY225; A:HIS241; A:LEU188; A:LEU226; A:LEU229; A:LYS198; A:MET233; A:NDP302; A:PHE113; A:PRO115; A:SER111; A:SER112; A:SER227; A:TYR191; A:TYR194; A:VAL230; D:ARG287
Current overlap	10	Native recall	0.53
Jaccard	0.53	RMSD	-
H-bond strict	0	Strict recall	0.00
H-bond same residue+role	0	Role recall	0.00
H-bond same residue	0	Residue recall	0.00

Hydrogen bonds

No hydrogen bonds detected for this pose.

π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

Hydrophobic contacts

Clashes

All stored poses for this docking hit

Pose	Final rank	Inter norm	Score	HB	Contacts	Native overlap	Native recall	HB role recall	RMSD	Excluded
1701	1.939656648821493	-1.21906	-22.9142	0	10	10	0.53	0.00	-	no	Current

Molecular metrics

FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.

✓ Metrics available

Scoring & efficiency

Docking score -22.914kcal/mol

Ligand efficiency (LE) -1.2730kcal/mol/HA

Score / heavy atom count

Fit quality (FQ) -10.202

LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe

Heavy atom count 18HA

Physicochemical properties

Molecular weight 235.3Da

Lipinski: ≤ 500 Da

LogP (cLogP) 3.24

Lipinski: ≤ 5

Rotatable bonds 3

Conformational strain (MMFF94s)

Strain energy (ΔE) 7.93kcal/mol

< 5 good · 5–10 marginal · > 10 problematic

Docked FF energy 45.16kcal/mol

Minimised FF energy 37.24kcal/mol

SASA & burial (FreeSASA)

not yet run

SASA has not been computed yet for this pose. It will be calculated automatically the next time this pose is loaded if a receptor PDB path is stored.

Z31216107