Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Weak
Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-1.094 kcal/mol/HA)
✓ Good fit quality (FQ -9.33)
✓ Good H-bonds (3 bonds)
✗ High strain energy (10.4 kcal/mol)
✗ Geometry warnings
✗ Protein contact clashes
ℹ SASA not computed
Score
-22.977
kcal/mol
LE
-1.094
kcal/mol/HA
Fit Quality
-9.33
FQ (Leeson)
HAC
21
heavy atoms
MW
301
Da
LogP
3.21
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, protein contact clashes, strain 10.4 kcal/mol
Interaction summary
Collapsible panels
H-bonds 3
Hydrophobic 24
π–π 4
Clashes 5
Severe clashes 0
| Final rank | 2.4535848355549774 | Score | -22.9774 |
|---|---|---|---|
| Inter norm | -1.17599 | Intra norm | 0.0818276 |
| Top1000 | no | Excluded | no |
| Contacts | 11 | H-bonds | 3 |
| Artifact reason | geometry warning; 8 clashes; 5 protein contact clashes; moderate strain Δ 12.6 | ||
| Residues | A:ARG17;A:GLY225;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:NDP302;A:PHE113;A:TYR191;A:TYR194;D:ARG287 | ||
Protein summary
308 residues
| Protein target | T04 | Atoms | 4210 |
|---|---|---|---|
| Residues | 308 | Chains | 3 |
| Residue summary | LEU:494; ALA:421; ARG:384; VAL:368; THR:295; TYR:231; SER:198; PRO:196; ILE:190; LYS:176; ASN:154; GLU:150; GLY:126; PHE:120; HIS:119; ASP:108 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 7PXX | Contacts | 19 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 8 |
| IFP residues | A:ARG17; A:ASP181; A:GLY225; A:HIS241; A:LEU188; A:LEU226; A:LEU229; A:LYS198; A:MET233; A:NDP302; A:PHE113; A:PRO115; A:SER111; A:SER112; A:SER227; A:TYR191; A:TYR194; A:VAL230; D:ARG287 | ||
| Current overlap | 11 | Native recall | 0.58 |
| Jaccard | 0.58 | RMSD | - |
| H-bond strict | 0 | Strict recall | 0.00 |
| H-bond same residue+role | 0 | Role recall | 0.00 |
| H-bond same residue | 1 | Residue recall | 0.20 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1792 | 1.4918963490611599 | -1.50673 | -28.6964 | 8 | 13 | 0 | 0.00 | 0.00 | - | no | Open |
| 2253 | 1.6428988416419488 | -0.81451 | -16.028 | 3 | 9 | 0 | 0.00 | 0.00 | - | no | Open |
| 1579 | 2.4535848355549774 | -1.17599 | -22.9774 | 3 | 11 | 11 | 0.58 | 0.00 | - | no | Current |
| 2075 | 3.9923955234372066 | -1.08918 | -21.0466 | 7 | 18 | 0 | 0.00 | 0.00 | - | no | Open |
| 1794 | 3.9844321309780257 | -1.371 | -26.0197 | 7 | 14 | 0 | 0.00 | 0.00 | - | yes | Open |
| 1578 | 4.065305819596276 | -1.29964 | -25.3355 | 2 | 13 | 13 | 0.68 | 0.00 | - | yes | Open |
| 1580 | 4.212532780515022 | -1.29502 | -25.6162 | 2 | 13 | 13 | 0.68 | 0.00 | - | yes | Open |
| 2076 | 5.473465590472017 | -1.26719 | -25.7151 | 7 | 17 | 0 | 0.00 | 0.00 | - | yes | Open |
| 2251 | 5.685960752915353 | -0.972159 | -18.4492 | 2 | 14 | 0 | 0.00 | 0.00 | - | yes | Open |
| 2074 | 6.105766032619169 | -1.40164 | -21.5647 | 7 | 21 | 0 | 0.00 | 0.00 | - | yes | Open |
| 1793 | 9.230390786950247 | -1.46084 | -28.8908 | 8 | 15 | 0 | 0.00 | 0.00 | - | yes | Open |
| 2252 | 11.706424756399004 | -0.973628 | -19.2261 | 7 | 14 | 0 | 0.00 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-22.977kcal/mol
Ligand efficiency (LE)
-1.0942kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-9.333
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
21HA
Physicochemical properties
Molecular weight
301.3Da
Lipinski: ≤ 500 Da
LogP (cLogP)
3.21
Lipinski: ≤ 5
Rotatable bonds
4
Conformational strain (MMFF94s)
Strain energy (ΔE)
10.38kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
34.96kcal/mol
Minimised FF energy
24.58kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.