Docking pose detail

Molecular metrics status: done

Cached molecular metrics are available for this pose.

Metrics cached · SASA missing

py3Dmol interaction viewer

Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.

Strict H-bonds Permissive H-bonds

Molecular report

Full metrics ↗

Reject Multiple quality flags — this pose should be deprioritised or discarded.

✓ Excellent LE (-0.727 kcal/mol/HA) ✓ Good fit quality (FQ -6.87) ✗ Very high strain energy (27.2 kcal/mol) ✗ No H-bonds detected ✗ Geometry warnings ✗ Protein contact clashes ℹ SASA not computed

Score

-20.363

kcal/mol

-0.727

kcal/mol/HA

Fit Quality

-6.87

FQ (Leeson)

HAC

heavy atoms

462

LogP

3.91

cLogP

Strain ΔE

27.2 kcal/mol

SASA buried

computing…

Overall: Promising but geometrically suspicious

Binding evidence: strong

Native-like contacts: strong

Ligand efficiency: excellent

Geometry reliability: low

Reason: geometry warning, clashes, protein contact clashes, strain 27.2 kcal/mol

Interaction summary

Collapsible panels

H-bonds 0 Hydrophobic 24 π–π 4 Clashes 6 Severe clashes 0

Final rank	4.907822553657604	Score	-20.3634
Inter norm	-0.795764	Intra norm	0.0684992
Top1000	no	Excluded	no
Contacts	15	H-bonds	0
Artifact reason	geometry warning; 13 clashes; 6 protein contact clashes; high strain Δ 29.0
Residues	A:ARG17;A:ASP232;A:GLY225;A:HIS241;A:LEU188;A:LEU226;A:LEU229;A:NDP302;A:PHE113;A:SER111;A:SER227;A:TYR191;A:TYR194;A:VAL230;D:ARG287

Protein summary

308 residues

Protein target	T04	Atoms	4210
Residues	308	Chains	3
Residue summary	LEU:494; ALA:421; ARG:384; VAL:368; THR:295; TYR:231; SER:198; PRO:196; ILE:190; LYS:176; ASN:154; GLU:150; GLY:126; PHE:120; HIS:119; ASP:108

Native ligand reference

★ reference

Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.

Name	7PXX	Contacts	19
Pose	Open native pose	H-bonds	8
IFP residues	A:ARG17; A:ASP181; A:GLY225; A:HIS241; A:LEU188; A:LEU226; A:LEU229; A:LYS198; A:MET233; A:NDP302; A:PHE113; A:PRO115; A:SER111; A:SER112; A:SER227; A:TYR191; A:TYR194; A:VAL230; D:ARG287
Current overlap	14	Native recall	0.74
Jaccard	0.70	RMSD	-
H-bond strict	0	Strict recall	0.00
H-bond same residue+role	0	Role recall	0.00
H-bond same residue	0	Residue recall	0.00

Hydrogen bonds

No hydrogen bonds detected for this pose.

π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

Hydrophobic contacts

Clashes

All stored poses for this docking hit

Pose	Final rank	Inter norm	Score	HB	Contacts	Native overlap	Native recall	RMSD	Excluded
1345	4.907822553657604	-0.795764	-20.3634	0	15	14	0.74	-	no	Current
1344	4.922488778414525	-0.708949	-18.8397	0	15	13	0.68	-	no	Open
1885	5.096041750193326	-0.908136	-23.753	3	18	0	0.00	-	no	Open
2759	5.976471539373534	-0.896591	-22.0726	3	18	0	0.00	-	no	Open
1719	6.1595454428874366	-0.760538	-19.4391	6	18	0	0.00	-	no	Open
1720	6.421137510019689	-0.804011	-18.6356	4	15	0	0.00	-	no	Open
1886	6.930408349349774	-0.817571	-20.2028	4	12	0	0.00	-	no	Open
2758	8.908880953336688	-0.938985	-23.5667	4	18	0	0.00	-	yes	Open

Molecular metrics

FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.

✓ Metrics available

Scoring & efficiency

Docking score -20.363kcal/mol

Ligand efficiency (LE) -0.7273kcal/mol/HA

Score / heavy atom count

Fit quality (FQ) -6.866

LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe

Heavy atom count 28HA

Physicochemical properties

Molecular weight 462.3Da

Lipinski: ≤ 500 Da

LogP (cLogP) 3.91

Lipinski: ≤ 5

Rotatable bonds 6

Conformational strain (MMFF94s)

Strain energy (ΔE) 27.21kcal/mol

< 5 good · 5–10 marginal · > 10 problematic

Docked FF energy 51.44kcal/mol

Minimised FF energy 24.23kcal/mol

SASA & burial (FreeSASA)

not yet run

SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.

Z32448862