Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Weak
Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-0.821 kcal/mol/HA)
✓ Good fit quality (FQ -7.35)
✗ High strain energy (10.1 kcal/mol)
✗ Geometry warnings
ℹ SASA not computed
Score
-19.694
kcal/mol
LE
-0.821
kcal/mol/HA
Fit Quality
-7.35
FQ (Leeson)
HAC
24
heavy atoms
MW
317
Da
LogP
3.05
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: mixed
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, strain 10.1 kcal/mol
Interaction summary
Collapsible panels
H-bonds 1
Hydrophobic 10
π–π 3
Clashes 4
Severe clashes 2
| Final rank | 5.864403683102621 | Score | -19.6941 |
|---|---|---|---|
| Inter norm | -0.804254 | Intra norm | -0.0163344 |
| Top1000 | no | Excluded | yes |
| Contacts | 9 | H-bonds | 1 |
| Artifact reason | excluded; geometry warning; 11 clashes; 2 protein clashes | ||
| Residues | A:ARG17;A:GLY225;A:LEU188;A:LEU226;A:LEU229;A:NDP302;A:PHE113;A:TYR191;A:TYR194 | ||
Protein summary
308 residues
| Protein target | T04 | Atoms | 4210 |
|---|---|---|---|
| Residues | 308 | Chains | 3 |
| Residue summary | LEU:494; ALA:421; ARG:384; VAL:368; THR:295; TYR:231; SER:198; PRO:196; ILE:190; LYS:176; ASN:154; GLU:150; GLY:126; PHE:120; HIS:119; ASP:108 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 7PXX | Contacts | 19 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 8 |
| IFP residues | A:ARG17; A:ASP181; A:GLY225; A:HIS241; A:LEU188; A:LEU226; A:LEU229; A:LYS198; A:MET233; A:NDP302; A:PHE113; A:PRO115; A:SER111; A:SER112; A:SER227; A:TYR191; A:TYR194; A:VAL230; D:ARG287 | ||
| Current overlap | 9 | Native recall | 0.47 |
| Jaccard | 0.47 | RMSD | - |
| H-bond strict | 0 | Strict recall | 0.00 |
| H-bond same residue+role | 0 | Role recall | 0.00 |
| H-bond same residue | 1 | Residue recall | 0.20 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1270 | 3.308032521728773 | -0.939053 | -19.2529 | 0 | 11 | 11 | 0.58 | 0.00 | - | no | Open |
| 1268 | 3.435623949302341 | -1.03876 | -22.9205 | 4 | 11 | 11 | 0.58 | 0.00 | - | no | Open |
| 1266 | 4.631922476672726 | -0.962688 | -20.6731 | 2 | 10 | 10 | 0.53 | 0.00 | - | yes | Open |
| 1269 | 5.526115040726339 | -0.932609 | -23.5794 | 0 | 9 | 9 | 0.47 | 0.00 | - | yes | Open |
| 1267 | 5.864403683102621 | -0.804254 | -19.6941 | 1 | 9 | 9 | 0.47 | 0.00 | - | yes | Current |
| 1265 | 6.447521748035415 | -0.894606 | -20.6355 | 1 | 10 | 10 | 0.53 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-19.694kcal/mol
Ligand efficiency (LE)
-0.8206kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-7.354
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
24HA
Physicochemical properties
Molecular weight
317.4Da
Lipinski: ≤ 500 Da
LogP (cLogP)
3.05
Lipinski: ≤ 5
Rotatable bonds
3
Conformational strain (MMFF94s)
Strain energy (ΔE)
10.10kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
149.73kcal/mol
Minimised FF energy
139.64kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.