FAIRMol

Z1546624232

Pose ID 7390 Compound 3751 Pose 616

DB fairmolDocking pose analysis is being read from this database.
Compound detail Protein structures Back to compounds
Molecular metrics status: done
RDKit SASA-based burial metrics are cached.
SASA cached
T11
L. infantum SIR2 L. infantum
Ligand Z1546624232

3D complex viewer

Strict H-bonds Permissive H-bonds
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Weak SASA cached
Weak or marginal quality
Binding strong Geometry high Native strong SASA done
Strain ΔE
28.0 kcal/mol
Protein clashes
2
Internal clashes
2
Native overlap
contact recall 0.83, Jaccard 0.65, H-bond role recall 0.40
Burial
78%
Hydrophobic fit
89%
Reason: no major geometry red flags detected
2 protein-contact clashes
Molecular report
Full metrics ↗
Weak Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-0.605 kcal/mol/HA) ✓ Good fit quality (FQ -6.19) ✓ Deep burial (78% SASA buried) ✓ Lipophilic contacts well-matched (89%) ✗ High strain energy (28.0 kcal/mol) ✗ Geometry warnings ✗ Many internal clashes (16)
Score
-22.368
kcal/mol
LE
-0.605
kcal/mol/HA
Fit Quality
-6.19
FQ (Leeson)
HAC
37
heavy atoms
MW
494
Da
LogP
4.59
cLogP
Final rank
2.9847
rank score
Inter norm
-0.734
normalised
Contacts
20
H-bonds 4
Strain ΔE
28.0 kcal/mol
SASA buried
78%
Lipo contact
89% BSA apolar/total
SASA unbound
864 Ų
Apolar buried
603 Ų

Interaction summary

HBA 2 PC 1 HY 10 PI 5 CLASH 2

HBD/HBA · H-bonds (geometric)
HBD = ligand donates H · HBA = ligand accepts H · ~ = weak (≥110°). Mode: strict. Residues: 2.

PC · Polar contacts (possible, no H geometry)
HBD?/HBA? — heavy-atom distance only, H geometry unavailable. May be real H-bonds.

PI · π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.

HY · Hydrophobic contacts

CLASH · Clashes

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
Name5OL0Contacts18
PoseOpen native poseHB0
IFP residues
ASN193 GLN220 GLU192 GLY191 HIS144 HIS222 ILE126 LEU194 LEU226 PHE189 PHE190 PHE199 PHE74 PRO223 THR71 VAL187 VAL188 VAL221
Current overlap15Native recall0.83
Jaccard0.65RMSD-
HB strict2Strict recall0.40
HB same residue+role2HB role recall0.40
HB same residue1HB residue recall0.25

Protein summary

287 residues
Protein targetT11Atoms4391
Residues287Chains1
Residue summaryLEU:627; ARG:432; VAL:384; GLU:316; PHE:300; ILE:285; ALA:260; PRO:238; HIS:187; ASP:157; LYS:154; SER:154; THR:154; GLY:147; ASN:140; TYR:126

All stored poses for this docking hit

PoseFinal rankInter normScoreHBCTCT overlapCT recallHB role rec.RMSDExcluded
613 1.8641098016108935 -0.628202 -21.1778 2 14 0 0.00 0.00 - no Open
616 2.9847119496149164 -0.734489 -22.3684 4 20 15 0.83 0.40 - no Current

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
✓ Metrics available

Scoring & efficiency
Docking score -22.368kcal/mol
Ligand efficiency (LE) -0.6046kcal/mol/HA
Score / heavy atom count
Fit quality (FQ) -6.189
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count 37HA

Physicochemical properties
Molecular weight 493.6Da
Lipinski: ≤ 500 Da
LogP (cLogP) 4.59
Lipinski: ≤ 5
Rotatable bonds 7

Conformational strain (MMFF94s)
Strain energy (ΔE) 28.01kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy 59.75kcal/mol
Minimised FF energy 31.74kcal/mol

SASA & burial

✓ computed
SASA (unbound) 864.3Ų
Total solvent-accessible surface area of free ligand
BSA total 677.9Ų
Buried surface area upon binding
BSA apolar 602.7Ų
Hydrophobic contacts buried
BSA polar 75.2Ų
Polar contacts buried
Fraction buried 78.4%
> 60 % indicates good pocket engagement
Lipophilic contact ratio 88.9%
BSA apolar / BSA total — high = hydrophobic driver
Δ Non-polar SASA -2191.1Ų
SASA_nonpolar(complex) − SASA_nonpolar(receptor) − SASA_nonpolar(ligand free). Negative = non-polar surface buried upon binding. Requires full polarity-decomposed SASA computation.
Receptor non-polar SASA 2380.0Ų
Non-polar SASA of receptor alone (VdW proxy, nonpolar atoms only)
Complex non-polar SASA 964.1Ų
Non-polar SASA of full complex (VdW proxy, nonpolar atoms only)