FAIRMol

ulfkktlib_169

Pose ID 6206 Compound 3554 Pose 110

DB fairmolDocking pose analysis is being read from this database.
Compound detail Protein structures Back to compounds
Molecular metrics status: done
RDKit SASA-based burial metrics are cached.
SASA cached
T10
L. infantum R5P L. infantum
Ligand ulfkktlib_169

3D complex viewer

Strict H-bonds Permissive H-bonds
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Weak SASA cached
Weak or marginal quality
Binding strong Geometry high Native strong SASA done
Strain ΔE
26.6 kcal/mol
Protein clashes
2
Internal clashes
2
Native overlap
contact recall 1.00, Jaccard 0.94, H-bond role recall 0.36
Burial
66%
Hydrophobic fit
88%
Reason: no major geometry red flags detected
2 protein-contact clashes 39% of hydrophobic surface appears solvent-exposed (9/23 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Molecular report
Full metrics ↗
Weak Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-0.814 kcal/mol/HA) ✓ Good fit quality (FQ -7.68) ✓ Strong H-bond network (6 bonds) ✓ Deep burial (66% SASA buried) ✓ Lipophilic contacts well-matched (88%) ✗ High strain energy (26.6 kcal/mol) ✗ Geometry warnings ✗ Internal clashes (6)
Score
-22.791
kcal/mol
LE
-0.814
kcal/mol/HA
Fit Quality
-7.68
FQ (Leeson)
HAC
28
heavy atoms
MW
386
Da
LogP
3.53
cLogP
Final rank
4.6938
rank score
Inter norm
-0.845
normalised
Contacts
18
H-bonds 11
Strain ΔE
26.6 kcal/mol
SASA buried
66%
Lipo contact
88% BSA apolar/total
SASA unbound
710 Ų
Apolar buried
408 Ų

Interaction summary

HBD 1 HBA 5 HY 2 PI 1 CLASH 2

HBD/HBA · H-bonds (geometric)
HBD = ligand donates H · HBA = ligand accepts H · ~ = weak (≥110°). Mode: strict. Residues: 5.

PI · π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.

HY · Hydrophobic contacts

CLASH · Clashes

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
Name6FXWContacts17
PoseOpen native poseHB0
IFP residues
ALA15 ARG116 ARG140 ARG144 ASN106 ASP13 CYS72 GLY73 GLY75 GLY77 HIS105 HIS14 HIS141 ILE76 LEU101 THR74 TYR49
Current overlap17Native recall1.00
Jaccard0.94RMSD-
HB strict5Strict recall0.38
HB same residue+role4HB role recall0.36
HB same residue7HB residue recall0.64

Protein summary

155 residues
Protein targetT10Atoms4590
Residues155Chains1
Residue summaryILE:494; ARG:384; ALA:360; VAL:352; LEU:304; GLU:300; THR:280; MET:272; LYS:220; ASP:216; TYR:210; HIS:204; GLY:182; SER:176; GLN:170; ASN:140

All stored poses for this docking hit

PoseFinal rankInter normScoreHBCTCT overlapCT recallHB role rec.RMSDExcluded
132 1.9885127352526542 -0.864012 -20.2477 8 14 0 0.00 0.00 - no Open
110 4.693817183119807 -0.845324 -22.7912 11 18 17 1.00 0.36 - no Current

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
✓ Metrics available

Scoring & efficiency
Docking score -22.791kcal/mol
Ligand efficiency (LE) -0.8140kcal/mol/HA
Score / heavy atom count
Fit quality (FQ) -7.684
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count 28HA

Physicochemical properties
Molecular weight 385.6Da
Lipinski: ≤ 500 Da
LogP (cLogP) 3.53
Lipinski: ≤ 5
Rotatable bonds 11

Conformational strain (MMFF94s)
Strain energy (ΔE) 26.59kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy 73.72kcal/mol
Minimised FF energy 47.13kcal/mol

SASA & burial

✓ computed
SASA (unbound) 709.5Ų
Total solvent-accessible surface area of free ligand
BSA total 466.4Ų
Buried surface area upon binding
BSA apolar 408.3Ų
Hydrophobic contacts buried
BSA polar 58.1Ų
Polar contacts buried
Fraction buried 65.7%
> 60 % indicates good pocket engagement
Lipophilic contact ratio 87.5%
BSA apolar / BSA total — high = hydrophobic driver
Δ Non-polar SASA -2376.1Ų
SASA_nonpolar(complex) − SASA_nonpolar(receptor) − SASA_nonpolar(ligand free). Negative = non-polar surface buried upon binding. Requires full polarity-decomposed SASA computation.
Receptor non-polar SASA 2417.4Ų
Non-polar SASA of receptor alone (VdW proxy, nonpolar atoms only)
Complex non-polar SASA 689.1Ų
Non-polar SASA of full complex (VdW proxy, nonpolar atoms only)