Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Reject
Multiple quality flags — this pose should be deprioritised or discarded.
✓ Excellent LE (-0.787 kcal/mol/HA)
✓ Good fit quality (FQ -7.59)
✓ Good H-bonds (3 bonds)
✗ Very high strain energy (28.3 kcal/mol)
✗ Geometry warnings
ℹ SASA not computed
Score
-23.619
kcal/mol
LE
-0.787
kcal/mol/HA
Fit Quality
-7.59
FQ (Leeson)
HAC
30
heavy atoms
MW
421
Da
LogP
3.94
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, strain 28.3 kcal/mol
Interaction summary
Collapsible panels
H-bonds 3
Hydrophobic 24
π–π 3
Clashes 11
Severe clashes 2
| Final rank | 9.2308098260559 | Score | -23.6189 |
|---|---|---|---|
| Inter norm | -0.854714 | Intra norm | 0.0674178 |
| Top1000 | no | Excluded | yes |
| Contacts | 20 | H-bonds | 3 |
| Artifact reason | excluded; geometry warning; 15 clashes; 2 protein clashes; high strain Δ 29.7 | ||
| Residues | A:ARG71;A:ASN65;A:ASP22;A:GLN36;A:GLU31;A:GLY21;A:ILE61;A:ILE8;A:LEU23;A:LEU68;A:LYS69;A:NAP201;A:PHE32;A:PHE35;A:PRO62;A:SER60;A:THR57;A:TYR122;A:VAL116;A:VAL9 | ||
Protein summary
200 residues
| Protein target | T02 | Atoms | 3128 |
|---|---|---|---|
| Residues | 200 | Chains | 2 |
| Residue summary | LYS:374; LEU:361; GLU:240; VAL:224; ARG:192; PHE:180; ILE:171; PRO:168; ASN:140; SER:132; TYR:126; GLN:119; ASP:108; MET:102; THR:98; GLY:91 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 5SD8 | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 5 |
| IFP residues | A:ALA10; A:ASN65; A:ASP22; A:GLN36; A:GLU31; A:GLY117; A:GLY21; A:ILE61; A:ILE8; A:LEU23; A:LEU68; A:NAP201; A:PHE32; A:PHE35; A:PRO62; A:SER60; A:THR137; A:THR57; A:TYR122; A:VAL116; A:VAL9 | ||
| Current overlap | 18 | Native recall | 0.86 |
| Jaccard | 0.78 | RMSD | - |
| H-bond strict | 2 | Strict recall | 0.40 |
| H-bond same residue+role | 2 | Role recall | 0.40 |
| H-bond same residue | 2 | Residue recall | 0.40 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 3129 | 5.30553003506395 | -0.954123 | -26.6523 | 3 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 3167 | 6.173291032914957 | -0.682302 | -19.513 | 2 | 17 | 14 | 0.67 | 0.20 | - | no | Open |
| 3124 | 6.215417197943953 | -0.861558 | -23.485 | 3 | 18 | 0 | 0.00 | 0.00 | - | no | Open |
| 3666 | 6.246697130747643 | -0.707757 | -20.5324 | 6 | 14 | 0 | 0.00 | 0.00 | - | no | Open |
| 3670 | 6.272432463998912 | -0.845636 | -25.0388 | 8 | 14 | 0 | 0.00 | 0.00 | - | no | Open |
| 3669 | 6.322932638041371 | -0.748965 | -21.3557 | 4 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 3668 | 6.6598710599952575 | -0.849058 | -23.1853 | 6 | 15 | 0 | 0.00 | 0.00 | - | no | Open |
| 3665 | 6.025346247140044 | -0.740679 | -21.9125 | 3 | 16 | 0 | 0.00 | 0.00 | - | yes | Open |
| 3667 | 6.7566606423586 | -0.754286 | -22.124 | 2 | 16 | 0 | 0.00 | 0.00 | - | yes | Open |
| 3126 | 7.2101202371091855 | -0.859099 | -23.8735 | 5 | 18 | 0 | 0.00 | 0.00 | - | yes | Open |
| 3127 | 8.241268674929234 | -0.810159 | -23.3605 | 4 | 18 | 0 | 0.00 | 0.00 | - | yes | Open |
| 3166 | 9.2308098260559 | -0.854714 | -23.6189 | 3 | 20 | 18 | 0.86 | 0.40 | - | yes | Current |
| 3125 | 9.317699948251644 | -0.863629 | -23.5269 | 2 | 18 | 0 | 0.00 | 0.00 | - | yes | Open |
| 3128 | 10.682020037457598 | -0.875906 | -22.7817 | 4 | 13 | 0 | 0.00 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-23.619kcal/mol
Ligand efficiency (LE)
-0.7873kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-7.595
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
30HA
Physicochemical properties
Molecular weight
420.9Da
Lipinski: ≤ 500 Da
LogP (cLogP)
3.94
Lipinski: ≤ 5
Rotatable bonds
5
Conformational strain (MMFF94s)
Strain energy (ΔE)
28.27kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
74.28kcal/mol
Minimised FF energy
46.00kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.