Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Weak
Marginal quality. Consider only alongside better-scoring alternatives.
✓ Excellent LE (-0.563 kcal/mol/HA)
✓ Good fit quality (FQ -5.98)
✗ Very high strain energy (21.3 kcal/mol)
✗ Geometry warnings
ℹ SASA not computed
Score
-24.206
kcal/mol
LE
-0.563
kcal/mol/HA
Fit Quality
-5.98
FQ (Leeson)
HAC
43
heavy atoms
MW
602
Da
LogP
5.07
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, strain 21.3 kcal/mol
Interaction summary
Collapsible panels
H-bonds 1
Hydrophobic 24
π–π 2
Clashes 4
Severe clashes 1
| Final rank | 6.547903565653843 | Score | -24.2058 |
|---|---|---|---|
| Inter norm | -0.500915 | Intra norm | -0.0620106 |
| Top1000 | no | Excluded | yes |
| Contacts | 20 | H-bonds | 1 |
| Artifact reason | excluded; geometry warning; 17 clashes; 1 protein clash; high strain Δ 20.7 | ||
| Residues | A:ALA10;A:ARG29;A:ASN65;A:ASP22;A:GLN36;A:GLU31;A:ILE61;A:ILE8;A:LEU23;A:LEU28;A:LEU68;A:NAP201;A:PHE32;A:PHE35;A:PRO27;A:PRO62;A:SER60;A:THR57;A:VAL116;A:VAL9 | ||
Protein summary
200 residues
| Protein target | T02 | Atoms | 3128 |
|---|---|---|---|
| Residues | 200 | Chains | 2 |
| Residue summary | LYS:374; LEU:361; GLU:240; VAL:224; ARG:192; PHE:180; ILE:171; PRO:168; ASN:140; SER:132; TYR:126; GLN:119; ASP:108; MET:102; THR:98; GLY:91 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 5SD8 | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 5 |
| IFP residues | A:ALA10; A:ASN65; A:ASP22; A:GLN36; A:GLU31; A:GLY117; A:GLY21; A:ILE61; A:ILE8; A:LEU23; A:LEU68; A:NAP201; A:PHE32; A:PHE35; A:PRO62; A:SER60; A:THR137; A:THR57; A:TYR122; A:VAL116; A:VAL9 | ||
| Current overlap | 17 | Native recall | 0.81 |
| Jaccard | 0.71 | RMSD | - |
| H-bond strict | 0 | Strict recall | 0.00 |
| H-bond same residue+role | 0 | Role recall | 0.00 |
| H-bond same residue | 0 | Residue recall | 0.00 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 251 | 5.640414563738265 | -0.577851 | -26.7784 | 1 | 20 | 17 | 0.81 | 0.00 | - | no | Open |
| 250 | 8.000650825826012 | -0.515006 | -15.9267 | 2 | 19 | 16 | 0.76 | 0.00 | - | no | Open |
| 249 | 6.547903565653843 | -0.500915 | -24.2058 | 1 | 20 | 17 | 0.81 | 0.00 | - | yes | Current |
| 248 | 56.86371224698699 | -0.570758 | -17.5904 | 1 | 17 | 14 | 0.67 | 0.00 | - | yes | Open |
| 245 | 56.91914852232238 | -0.557078 | -20.0457 | 1 | 19 | 15 | 0.71 | 0.00 | - | yes | Open |
| 247 | 58.090322511427644 | -0.51216 | -20.6074 | 2 | 18 | 15 | 0.71 | 0.20 | - | yes | Open |
| 252 | 60.06941724351195 | -0.470527 | -18.2401 | 6 | 11 | 7 | 0.33 | 0.00 | - | yes | Open |
| 246 | 61.10540225328442 | -0.415267 | -11.7934 | 1 | 20 | 15 | 0.71 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-24.206kcal/mol
Ligand efficiency (LE)
-0.5629kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-5.983
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
43HA
Physicochemical properties
Molecular weight
601.7Da
Lipinski: ≤ 500 Da
LogP (cLogP)
5.07
Lipinski: ≤ 5
Rotatable bonds
13
Conformational strain (MMFF94s)
Strain energy (ΔE)
21.32kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
68.89kcal/mol
Minimised FF energy
47.58kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.