Molecular metrics status: done
Cached molecular metrics are available for this pose.
Metrics cached · SASA missing
py3Dmol interaction viewer
Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Molecular report
Reject
Multiple quality flags — this pose should be deprioritised or discarded.
✓ Excellent LE (-1.288 kcal/mol/HA)
✓ Good fit quality (FQ -11.54)
✓ Strong H-bond network (6 bonds)
✗ Very high strain energy (21.4 kcal/mol)
✗ Geometry warnings
✗ Protein contact clashes
ℹ SASA not computed
Score
-30.911
kcal/mol
LE
-1.288
kcal/mol/HA
Fit Quality
-11.54
FQ (Leeson)
HAC
24
heavy atoms
MW
369
Da
LogP
1.63
cLogP
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: mixed
Ligand efficiency: excellent
Geometry reliability: low
Reason: geometry warning, clashes, protein contact clashes, strain 21.4 kcal/mol
Interaction summary
Collapsible panels
H-bonds 6
Hydrophobic 24
π–π 2
Clashes 5
Severe clashes 0
| Final rank | 3.04264962836736 | Score | -30.9111 |
|---|---|---|---|
| Inter norm | -1.24508 | Intra norm | -0.0428798 |
| Top1000 | no | Excluded | no |
| Contacts | 15 | H-bonds | 6 |
| Artifact reason | geometry warning; 7 clashes; 5 protein contact clashes; high strain Δ 26.0 | ||
| Residues | A:ALA10;A:ARG29;A:ASP22;A:GLU31;A:ILE8;A:LEU23;A:LEU28;A:NAP201;A:PHE32;A:PHE35;A:PRO27;A:TRP25;A:TYR122;A:VAL116;A:VAL9 | ||
Protein summary
200 residues
| Protein target | T02 | Atoms | 3128 |
|---|---|---|---|
| Residues | 200 | Chains | 2 |
| Residue summary | LYS:374; LEU:361; GLU:240; VAL:224; ARG:192; PHE:180; ILE:171; PRO:168; ASN:140; SER:132; TYR:126; GLN:119; ASP:108; MET:102; THR:98; GLY:91 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
| Name | 5SD8 | Contacts | 21 |
|---|---|---|---|
| Pose | Open native pose | H-bonds | 5 |
| IFP residues | A:ALA10; A:ASN65; A:ASP22; A:GLN36; A:GLU31; A:GLY117; A:GLY21; A:ILE61; A:ILE8; A:LEU23; A:LEU68; A:NAP201; A:PHE32; A:PHE35; A:PRO62; A:SER60; A:THR137; A:THR57; A:TYR122; A:VAL116; A:VAL9 | ||
| Current overlap | 11 | Native recall | 0.52 |
| Jaccard | 0.44 | RMSD | - |
| H-bond strict | 1 | Strict recall | 0.20 |
| H-bond same residue+role | 2 | Role recall | 0.40 |
| H-bond same residue | 2 | Residue recall | 0.40 |
Hydrogen bonds
Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.
π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
Hydrophobic contacts
Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | Contacts | Native overlap | Native recall | HB role recall | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 2203 | 3.04264962836736 | -1.24508 | -30.9111 | 6 | 15 | 11 | 0.52 | 0.40 | - | no | Current |
| 951 | 3.209369861963191 | -1.34941 | -30.1267 | 13 | 17 | 0 | 0.00 | 0.00 | - | no | Open |
| 1517 | 4.231744403338426 | -0.856748 | -22.4171 | 7 | 13 | 0 | 0.00 | 0.00 | - | no | Open |
| 1687 | 4.442735965503143 | -0.798614 | -19.3386 | 9 | 9 | 0 | 0.00 | 0.00 | - | no | Open |
| 950 | 4.919317466636542 | -0.80733 | -17.091 | 3 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 953 | 5.373463401872551 | -0.824942 | -13.9618 | 3 | 16 | 0 | 0.00 | 0.00 | - | no | Open |
| 952 | 4.730299279602893 | -1.16342 | -27.1529 | 11 | 13 | 0 | 0.00 | 0.00 | - | yes | Open |
| 2204 | 6.8471703156637345 | -1.14424 | -22.7466 | 5 | 14 | 10 | 0.48 | 0.20 | - | yes | Open |
| 951 | 9.591967740794129 | -0.942599 | -23.7655 | 6 | 21 | 0 | 0.00 | 0.00 | - | yes | Open |
| 952 | 9.756240701035665 | -0.96164 | -21.6733 | 6 | 22 | 0 | 0.00 | 0.00 | - | yes | Open |
Molecular metrics
FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Scoring & efficiency
Docking score
-30.911kcal/mol
Ligand efficiency (LE)
-1.2880kcal/mol/HA
Score / heavy atom count
Fit quality (FQ)
-11.543
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count
24HA
Physicochemical properties
Molecular weight
369.5Da
Lipinski: ≤ 500 Da
LogP (cLogP)
1.63
Lipinski: ≤ 5
Rotatable bonds
7
Conformational strain (MMFF94s)
Strain energy (ΔE)
21.45kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy
-22.44kcal/mol
Minimised FF energy
-43.89kcal/mol
SASA & burial (FreeSASA)
not yet run
SASA has not been computed yet for this pose. Queue a background recompute to populate FreeSASA burial metrics without blocking the page.