FAIRMol

NMT-TY0601

Pose ID 21580 Compound 340 Pose 1064

DB Docking_panel_21Docking pose analysis is being read from this database.
Molecular metrics status: queued
Pose metrics recompute is queued in the background.
Metrics cached · SASA missing

py3Dmol interaction viewer

Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Strict H-bonds Permissive H-bonds
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: weak
Geometry reliability: low
Reason: geometry warning, clashes

Interaction summary

Collapsible panels
H-bonds 10 Hydrophobic 24 π–π 3 Clashes 11 Severe clashes 1
Final rank7.576988738420098Score-25.7204
Inter norm-0.875363Intra norm0.0180155
Top1000noExcludedyes
Contacts14H-bonds10
Artifact reasonexcluded; geometry warning; 11 clashes; 1 protein clash; high strain Δ 36.0
ResiduesA:ASN193;A:GLU192;A:GLY191;A:HIS144;A:HIS222;A:ILE126;A:LEU194;A:PHE189;A:PHE190;A:PHE74;A:PRO223;A:VAL187;A:VAL188;A:VAL221

Protein summary

287 residues
Protein targetT11Atoms4391
Residues287Chains1
Residue summaryLEU:627; ARG:432; VAL:384; GLU:316; PHE:300; ILE:285; ALA:260; PRO:238; HIS:187; ASP:157; LYS:154; SER:154; THR:154; GLY:147; ASN:140; TYR:126

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
Name5OL0Contacts18
PoseOpen native poseH-bonds5
IFP residuesA:ASN193; A:GLN220; A:GLU192; A:GLY191; A:HIS144; A:HIS222; A:ILE126; A:LEU194; A:LEU226; A:PHE189; A:PHE190; A:PHE199; A:PHE74; A:PRO223; A:THR71; A:VAL187; A:VAL188; A:VAL221
Current overlap14Native recall0.78
Jaccard0.78RMSD-
H-bond strict3Strict recall0.60
H-bond same residue+role3Role recall0.60
H-bond same residue3Residue recall0.75

Hydrogen bonds

Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.

π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

Hydrophobic contacts

Clashes

All stored poses for this docking hit

PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB role recallRMSDExcluded
669 3.8922765320298804 -0.772346 -23.2202 2 14 1 0.06 0.00 - no Open
1382 4.642601901256108 -0.678033 -19.9602 7 14 0 0.00 0.00 - no Open
664 4.750332289710839 -0.88385 -25.3615 1 14 1 0.06 0.00 - no Open
1379 4.779271309829299 -0.681149 -21.0229 5 15 0 0.00 0.00 - no Open
666 5.513766713286891 -0.863036 -19.3766 2 14 1 0.06 0.00 - no Open
1377 5.6643976693458775 -0.650903 -18.8759 7 13 0 0.00 0.00 - no Open
868 5.674391699985516 -0.946675 -27.7469 9 17 0 0.00 0.00 - no Open
1381 5.886343167336648 -0.736858 -20.6793 4 14 0 0.00 0.00 - no Open
1239 5.908800315013041 -0.696744 -18.9376 4 19 0 0.00 0.00 - no Open
2128 5.914229069986902 -0.818688 -25.4767 1 21 0 0.00 0.00 - no Open
667 6.169856997701089 -0.84472 -24.5236 1 14 1 0.06 0.00 - no Open
2129 6.2214407052564145 -0.748765 -20.9338 0 21 0 0.00 0.00 - no Open
1241 6.863308812971197 -0.602247 -17.3624 8 15 0 0.00 0.00 - no Open
1065 7.0324287513726365 -0.663848 -18.4035 7 17 12 0.67 0.40 - no Open
1380 7.288408200186212 -0.754263 -20.827 5 15 0 0.00 0.00 - no Open
665 5.684297625290064 -0.916521 -26.3515 1 14 1 0.06 0.00 - yes Open
2127 5.844616105203985 -0.8037 -24.7428 3 19 0 0.00 0.00 - yes Open
1378 6.229523561042825 -0.672605 -20.5375 4 14 0 0.00 0.00 - yes Open
668 6.737119225520541 -0.857366 -24.9811 1 14 1 0.06 0.00 - yes Open
869 6.936586780666548 -1.04711 -31.0807 10 13 0 0.00 0.00 - yes Open
867 7.313702586179983 -0.931335 -24.7235 9 16 0 0.00 0.00 - yes Open
1383 7.400611302871373 -0.616353 -17.0373 5 14 0 0.00 0.00 - yes Open
1064 7.576988738420098 -0.875363 -25.7204 10 14 14 0.78 0.60 - yes Current
866 7.7744810733977285 -1.14564 -34.7998 11 16 0 0.00 0.00 - yes Open
1063 8.31433797845171 -0.888004 -22.2524 5 13 11 0.61 0.80 - yes Open
2130 8.347464761416191 -0.85248 -21.7854 4 15 0 0.00 0.00 - yes Open
1243 8.82251081094913 -0.636435 -17.2373 6 19 0 0.00 0.00 - yes Open
1242 10.418018329946815 -0.780717 -23.4612 7 14 0 0.00 0.00 - yes Open
1240 11.210647318805645 -0.757182 -20.0427 10 16 0 0.00 0.00 - yes Open
2131 11.293243709494899 -0.825709 -19.4923 4 16 0 0.00 0.00 - yes Open
1238 11.399224789178154 -0.5628 -17.4864 5 14 0 0.00 0.00 - yes Open

Molecular metrics

FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
⚠ Not yet computed
Molecular metrics have not been computed for this pose yet. This page now reads only cached values; use a background recompute when you want fresh metrics without slowing the UI.