FAIRMol

KB_Leish_38

Pose ID 20972 Compound 97 Pose 456

DB Docking_panel_21Docking pose analysis is being read from this database.
Molecular metrics status: queued
Pose metrics recompute is queued in the background.
Metrics cached · SASA missing

py3Dmol interaction viewer

Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.
Strict H-bonds Permissive H-bonds
Overall: Promising but geometrically suspicious
Binding evidence: strong
Native-like contacts: strong
Ligand efficiency: weak
Geometry reliability: low
Reason: geometry warning, clashes

Interaction summary

Collapsible panels
H-bonds 6 Hydrophobic 24 π–π 2 Clashes 10 Severe clashes 3
Final rank58.3588014707584Score-23.3039
Inter norm-0.792057Intra norm0.0638104
Top1000noExcludedyes
Contacts17H-bonds6
Artifact reasonexcluded; geometry warning; 12 clashes; 3 protein clashes
ResiduesA:ALA40;A:ASN125;A:ASN193;A:GLN124;A:GLU192;A:GLY191;A:HIS144;A:HIS222;A:ILE126;A:LEU194;A:PHE189;A:PHE190;A:PHE199;A:PHE74;A:PRO223;A:VAL188;A:VAL221

Protein summary

287 residues
Protein targetT11Atoms4391
Residues287Chains1
Residue summaryLEU:627; ARG:432; VAL:384; GLU:316; PHE:300; ILE:285; ALA:260; PRO:238; HIS:187; ASP:157; LYS:154; SER:154; THR:154; GLY:147; ASN:140; TYR:126

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
Name5OL0Contacts18
PoseOpen native poseH-bonds5
IFP residuesA:ASN193; A:GLN220; A:GLU192; A:GLY191; A:HIS144; A:HIS222; A:ILE126; A:LEU194; A:LEU226; A:PHE189; A:PHE190; A:PHE199; A:PHE74; A:PRO223; A:THR71; A:VAL187; A:VAL188; A:VAL221
Current overlap14Native recall0.78
Jaccard0.67RMSD-
H-bond strict3Strict recall0.60
H-bond same residue+role3Role recall0.60
H-bond same residue4Residue recall1.00

Hydrogen bonds

Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.

π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

Hydrophobic contacts

Clashes

All stored poses for this docking hit

PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB role recallRMSDExcluded
660 3.795738511824096 -0.740854 -23.4787 0 17 0 0.00 0.00 - no Open
503 3.988941166107284 -1.0814 -35.9646 4 17 0 0.00 0.00 - no Open
494 3.9976456355938614 -0.955068 -26.488 6 15 0 0.00 0.00 - no Open
411 4.179224967531099 -0.604346 -12.6724 3 14 0 0.00 0.00 - no Open
479 4.2079538946262245 -0.542849 -17.668 2 11 0 0.00 0.00 - no Open
493 4.278584422778635 -0.978743 -32.4276 5 16 0 0.00 0.00 - no Open
502 4.390430401900558 -0.817173 -23.4263 5 15 0 0.00 0.00 - no Open
663 4.549679996003226 -0.701548 -15.3531 2 16 0 0.00 0.00 - no Open
474 4.721705757086878 -0.608148 -20.3689 1 12 0 0.00 0.00 - no Open
504 4.870768241917139 -0.925958 -24.4767 5 19 0 0.00 0.00 - no Open
498 5.0288508018692 -0.833404 -25.0908 5 17 0 0.00 0.00 - no Open
501 5.083427611412111 -0.845133 -25.8109 8 18 0 0.00 0.00 - no Open
473 5.1913572471149765 -0.631877 -17.7249 4 15 0 0.00 0.00 - no Open
455 5.192012366469978 -0.775754 -12.0747 4 20 16 0.89 0.40 - no Open
482 5.230282650644279 -0.633956 -20.8965 2 11 0 0.00 0.00 - no Open
412 5.26404058431113 -0.625733 -20.5562 5 16 0 0.00 0.00 - no Open
449 5.29145744783457 -0.730922 -17.6053 2 19 12 0.67 0.00 - no Open
478 5.405302461155027 -0.526514 -17.1768 3 14 0 0.00 0.00 - no Open
499 5.5262845155147895 -1.05537 -29.5064 5 17 0 0.00 0.00 - no Open
477 5.565773021984288 -0.544493 -16.8233 2 14 0 0.00 0.00 - no Open
497 5.879973529956362 -0.885559 -27.3225 3 17 0 0.00 0.00 - no Open
418 6.006345263291581 -0.64667 -16.0281 2 17 0 0.00 0.00 - no Open
420 6.2264629756072445 -0.727164 -18.7076 7 16 0 0.00 0.00 - no Open
495 6.699382192987704 -1.01614 -27.3564 9 16 0 0.00 0.00 - no Open
452 6.959601631747587 -0.79477 -20.0681 3 20 13 0.72 0.40 - no Open
419 5.149244096415285 -0.825168 -25.986 3 17 0 0.00 0.00 - yes Open
457 5.315690621468081 -0.840953 -27.1211 5 19 16 0.89 0.60 - yes Open
451 5.494711029650935 -0.72837 -18.6427 5 19 16 0.89 0.40 - yes Open
480 6.004671401610363 -0.524919 -10.4028 3 11 0 0.00 0.00 - yes Open
446 6.211212866437372 -0.779262 -23.9659 4 17 15 0.83 0.20 - yes Open
448 6.266014492426665 -0.75355 -23.8291 5 16 15 0.83 0.60 - yes Open
491 6.306263210122003 -1.16661 -35.1801 5 16 0 0.00 0.00 - yes Open
413 6.793166012602316 -0.555856 -18.9206 4 12 0 0.00 0.00 - yes Open
454 7.104314659679892 -0.848874 -26.1661 6 18 14 0.78 0.60 - yes Open
447 7.138670824976789 -0.711041 -21.9002 2 16 15 0.83 0.20 - yes Open
476 7.235579660408884 -0.572884 -14.2935 4 11 0 0.00 0.00 - yes Open
492 7.366123557755595 -0.900503 -24.7239 4 17 0 0.00 0.00 - yes Open
662 7.7995268447585575 -0.845584 -20.7847 2 17 0 0.00 0.00 - yes Open
453 8.055687506671333 -0.775982 -22.1983 5 16 15 0.83 0.60 - yes Open
496 55.884180783345265 -1.04868 -28.066 5 16 0 0.00 0.00 - yes Open
661 56.14791273038879 -0.684951 -16.8307 0 19 0 0.00 0.00 - yes Open
481 56.414522399412526 -0.592491 -21.0329 0 11 0 0.00 0.00 - yes Open
417 56.477732338612455 -0.767074 -22.4594 3 17 0 0.00 0.00 - yes Open
410 56.53988120423411 -0.692771 -20.0878 1 16 0 0.00 0.00 - yes Open
450 57.345380226195864 -0.799503 -25.7211 3 16 13 0.72 0.60 - yes Open
500 58.01169473496874 -0.954019 -21.1319 3 17 0 0.00 0.00 - yes Open
456 58.3588014707584 -0.792057 -23.3039 6 17 14 0.78 0.60 - yes Current
475 59.350383609744604 -0.658859 -15.7459 6 15 0 0.00 0.00 - yes Open

Molecular metrics

FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
⚠ Not yet computed
Molecular metrics have not been computed for this pose yet. This page now reads only cached values; use a background recompute when you want fresh metrics without slowing the UI.