Docking pose detail

Molecular metrics status: queued

Pose metrics recompute is queued in the background.

Metrics cached · SASA missing

py3Dmol interaction viewer

Left: interactive complex viewer. Right: clickable PLIP-like interaction summary. Clicking an interaction thickens and highlights it in the 3D view.

Strict H-bonds Permissive H-bonds

Overall: Promising but geometrically suspicious

Binding evidence: strong

Native-like contacts: strong

Ligand efficiency: weak

Geometry reliability: low

Reason: geometry warning, clashes, protein contact clashes

Interaction summary

Collapsible panels

H-bonds 4 Hydrophobic 24 π–π 2 Clashes 8 Severe clashes 0

Final rank	4.900403825276257	Score	-23.4031
Inter norm	-0.865929	Intra norm	-0.000853313
Top1000	no	Excluded	no
Contacts	18	H-bonds	4
Artifact reason	geometry warning; 13 clashes; 8 protein contact clashes; high strain Δ 21.0
Residues	A:NDP301;B:ALA32;B:ARG48;B:ASP52;B:ILE45;B:MET53;B:PHE56;B:PRO50;B:PRO88;B:SER86;B:THR83;B:TRP47;B:TYR162;B:VAL156;B:VAL30;B:VAL31;B:VAL49;B:VAL87

Protein summary

511 residues

Protein target	T09	Atoms	8170
Residues	511	Chains	2
Residue summary	LEU:1064; ARG:840; LYS:572; GLU:570; VAL:528; PHE:460; ILE:456; ALA:440; PRO:420; THR:406; TYR:357; ASP:312; GLN:289; ASN:238; SER:231; GLY:224

Native ligand reference

★ reference

Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.

Name	3CL9	Contacts	21
Pose	Open native pose	H-bonds	9
IFP residues	A:NDP301; B:ALA32; B:ARG97; B:ASP52; B:GLY157; B:ILE45; B:LEU94; B:LYS57; B:MET53; B:PHE55; B:PHE56; B:PHE91; B:PRO88; B:SER86; B:THR180; B:THR83; B:TYR162; B:VAL156; B:VAL30; B:VAL31; B:VAL87
Current overlap	14	Native recall	0.67
Jaccard	0.56	RMSD	-
H-bond strict	0	Strict recall	0.00
H-bond same residue+role	0	Role recall	0.00
H-bond same residue	0	Residue recall	0.00

Hydrogen bonds

Mode: strict. Count shows atom-level H-bonds; unique residues in summary: 0.

π–π interactions

Native π–π recall is disabled because no explicit native π–π reference was stored.

Hydrophobic contacts

Clashes

All stored poses for this docking hit

Pose	Final rank	Inter norm	Score	HB	Contacts	Native overlap	Native recall	HB role recall	RMSD	Excluded
1743	4.900403825276257	-0.865929	-23.4031	4	18	14	0.67	0.00	-	no	Current
1741	7.1599429073557594	-0.744876	-27.0679	2	13	13	0.62	0.17	-	yes	Open
1751	7.189888010679121	-0.978924	-23.5299	4	18	14	0.67	0.17	-	yes	Open
1748	7.262361110575006	-0.694619	-22.5585	2	13	13	0.62	0.17	-	yes	Open
1739	7.313667715336863	-0.938801	-25.2096	4	18	13	0.62	0.00	-	yes	Open
1742	7.6771176250940165	-0.926468	-31.0333	4	17	12	0.57	0.17	-	yes	Open
1750	8.024824534699627	-0.893791	-28.94	4	16	12	0.57	0.17	-	yes	Open
1737	8.048397172677294	-0.878553	-30.4152	3	17	13	0.62	0.00	-	yes	Open
1746	8.35996346293248	-0.833435	-28.5643	4	11	6	0.29	0.00	-	yes	Open
1738	8.514698154187329	-0.96547	-28.2609	7	16	12	0.57	0.17	-	yes	Open
1744	9.550509144449988	-0.719218	-25.6511	6	15	13	0.62	0.00	-	yes	Open
1747	9.965723985501743	-0.841231	-24.655	7	13	7	0.33	0.33	-	yes	Open
1736	58.46822265758997	-0.795837	-23.6955	5	14	9	0.43	0.17	-	yes	Open
1745	61.53792294584316	-0.7105	-25.1586	4	10	6	0.29	0.33	-	yes	Open
1749	62.78070230661455	-0.746281	-21.3348	8	19	14	0.67	0.17	-	yes	Open
1740	75.46166172951555	-0.595894	-130.534	7	12	11	0.52	0.00	-	yes	Open

Molecular metrics

FreeSASA-based burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.

⚠ Not yet computed

Molecular metrics have not been computed for this pose yet. This page now reads only cached values; use a background recompute when you want fresh metrics without slowing the UI.

Z49620451