FAIRMol

Z29294093

Pose ID 14217 Compound 197 Pose 659

DB fairmolDocking pose analysis is being read from this database.
Compound detail Protein structures Back to compounds
Molecular metrics status: done
RDKit SASA-based burial metrics are cached.
SASA cached
T21
T. cruzi R5P T. cruzi
Ligand Z29294093
PDB3K7O↗

3D complex viewer

Strict H-bonds Permissive H-bonds
Viewer legend
Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Reject SASA cached
Likely artefact or unreliable pose
Binding strong Geometry medium Native strong SASA done
Strain ΔE
42.0 kcal/mol
Protein clashes
2
Internal clashes
2
Native overlap
contact recall 1.00, Jaccard 0.78, H-bond role recall 0.44
Burial
81%
Hydrophobic fit
70%
Reason: no major geometry red flags detected
2 protein-contact clashes
Molecular report
Full metrics ↗
Reject Multiple quality flags — this pose should be deprioritised or discarded.
✓ Excellent LE (-1.466 kcal/mol/HA) ✓ Good fit quality (FQ -14.41) ✓ Good H-bonds (3 bonds) ✓ Deep burial (81% SASA buried) ✓ Lipophilic contacts well-matched (70%) ✗ Extreme strain energy (42.0 kcal/mol) ✗ Geometry warnings ✗ Many internal clashes (10)
Score
-46.897
kcal/mol
LE
-1.466
kcal/mol/HA
Fit Quality
-14.41
FQ (Leeson)
HAC
32
heavy atoms
MW
492
Da
LogP
2.75
cLogP
Final rank
3.0754
rank score
Inter norm
-0.787
normalised
Contacts
18
H-bonds 11
Strain ΔE
42.0 kcal/mol
SASA buried
81%
Lipo contact
70% BSA apolar/total
SASA unbound
677 Ų
Apolar buried
383 Ų

Interaction summary

HBA 3 HY 5 PI 3 CLASH 2

HBD/HBA · H-bonds (geometric)
HBD = ligand donates H · HBA = ligand accepts H · ~ = weak (≥110°). Mode: strict. Residues: 2.

PI · π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.

HY · Hydrophobic contacts

CLASH · Clashes

Native ligand reference

★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: strict.
Name3K7OContacts14
PoseOpen native poseHB0
IFP residues
ARG137 ARG141 ASN103 HIS102 HIS138 ASP10 CYS69 GLY70 GLY74 HIS11 ILE73 PRO12 SER71 TYR46
Current overlap14Native recall1.00
Jaccard0.78RMSD-
HB strict5Strict recall0.42
HB same residue+role4HB role recall0.44
HB same residue4HB residue recall0.50

Protein summary

305 residues
Protein targetT21Atoms4646
Residues305Chains2
Residue summaryARG:576; ILE:532; VAL:512; GLU:420; ALA:360; PHE:240; HIS:238; LYS:220; THR:210; LEU:190; PRO:168; TYR:168; GLY:154; SER:154; ASP:144; ASN:112

All stored poses for this docking hit

PoseFinal rankInter normScoreHBCTCT overlapCT recallHB role rec.RMSDExcluded
647 1.1847930015500647 -0.884942 -49.0529 4 19 0 0.00 0.00 - no Open
632 1.4951936856465549 -0.821422 -31.1479 4 15 0 0.00 0.00 - no Open
632 1.7612227019476687 -0.793129 -46.3282 4 20 0 0.00 0.00 - no Open
659 3.075408860119218 -0.786972 -46.8966 11 18 14 1.00 0.44 - no Current
641 3.178654702339341 -0.732381 -47.0997 5 13 0 0.00 0.00 - no Open

Molecular metrics

RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
✓ Metrics available

Scoring & efficiency
Docking score -46.897kcal/mol
Ligand efficiency (LE) -1.4655kcal/mol/HA
Score / heavy atom count
Fit quality (FQ) -14.412
LE / (0.072 + 0.95/HAC) — Leeson & Springthorpe
Heavy atom count 32HA

Physicochemical properties
Molecular weight 491.6Da
Lipinski: ≤ 500 Da
LogP (cLogP) 2.75
Lipinski: ≤ 5
Rotatable bonds 6

Conformational strain (MMFF94s)
Strain energy (ΔE) 41.97kcal/mol
< 5 good · 5–10 marginal · > 10 problematic
Docked FF energy 74.88kcal/mol
Minimised FF energy 32.91kcal/mol

SASA & burial

✓ computed
SASA (unbound) 677.2Ų
Total solvent-accessible surface area of free ligand
BSA total 546.0Ų
Buried surface area upon binding
BSA apolar 382.5Ų
Hydrophobic contacts buried
BSA polar 163.5Ų
Polar contacts buried
Fraction buried 80.6%
> 60 % indicates good pocket engagement
Lipophilic contact ratio 70.1%
BSA apolar / BSA total — high = hydrophobic driver
Δ Non-polar SASA -2208.0Ų
SASA_nonpolar(complex) − SASA_nonpolar(receptor) − SASA_nonpolar(ligand free). Negative = non-polar surface buried upon binding. Requires full polarity-decomposed SASA computation.
Receptor non-polar SASA 2482.0Ų
Non-polar SASA of receptor alone (VdW proxy, nonpolar atoms only)
Complex non-polar SASA 776.2Ų
Non-polar SASA of full complex (VdW proxy, nonpolar atoms only)