Molecular metrics status: missing
Molecular metrics have not been computed yet for this pose.
No cached metrics
3D complex viewer
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Protein receptor
Pocket residues
Cofactor context
Docked ligand
Overall assessment
Weak
Metrics pending
Weak or marginal quality
Binding strong
Geometry medium
Native strong
SASA pending
Strain ΔE
not computed
Protein clashes
4
Internal clashes
4
Native overlap
contact recall 0.79, Jaccard 0.61, H-bond role recall 0.67
Reason: no major geometry red flags detected
4 protein-contact clashes
4 intramolecular clashes
Interaction summary
HB 15
HY 1
PI 2
CLASH 4
Interaction summary
HB 15
HY 1
PI 2
CLASH 4
| Final rank | 5.373 | Score | -21.747 |
|---|---|---|---|
| Inter norm | -1.043 | Intra norm | 0.098 |
| Top1000 | no | Excluded | yes |
| Contacts | 15 | H-bonds | 10 |
| Artifact reason | excluded; geometry warning; 10 clashes; 4 protein clashes | ||
| Residues |
ARG137
ARG141
ASN103
HIS102
MET98
SER99
CYS69
GLY70
GLY72
GLY74
HIS11
ILE73
SER43
SER71
TYR46
| ||
Protein summary
305 residues
| Protein target | T21 | Atoms | 4646 |
|---|---|---|---|
| Residues | 305 | Chains | 2 |
| Residue summary | ARG:576; ILE:532; VAL:512; GLU:420; ALA:360; PHE:240; HIS:238; LYS:220; THR:210; LEU:190; PRO:168; TYR:168; GLY:154; SER:154; ASP:144; ASN:112 | ||
Native ligand reference
★ reference
Interaction fingerprint calculated directly from the uploaded native ligand without docking. Current H-bond mode: permissive.
| Name | 3K7O | Contacts | 14 |
|---|---|---|---|
| Pose | Open native pose | HB | 0 |
| IFP residues |
ARG137
ARG141
ASN103
HIS102
HIS138
ASP10
CYS69
GLY70
GLY74
HIS11
ILE73
PRO12
SER71
TYR46
| ||
| Current overlap | 11 | Native recall | 0.79 |
| Jaccard | 0.61 | RMSD | - |
| HB strict | 7 | Strict recall | 0.58 |
| HB same residue+role | 6 | HB role recall | 0.67 |
| HB same residue | 5 | HB residue recall | 0.62 |
HB · H-bonds
Mode: permissive. Count shows atom-level H-bonds; unique residues in summary: 0.
PI · π–π interactions
Native π–π recall is disabled because no explicit native π–π reference was stored.
HY · Hydrophobic contacts
CLASH · Clashes
All stored poses for this docking hit
| Pose | Final rank | Inter norm | Score | HB | CT | CT overlap | CT recall | HB role rec. | RMSD | Excluded | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 446 | 5.372601161392307 | -1.04312 | -21.7474 | 10 | 15 | 11 | 0.79 | 0.67 | - | yes | Current |
Molecular metrics
RDKit SASA burial, strain energy (MMFF94s), ligand efficiency and fit quality for this docking pose.
Molecular metrics have not been computed for this pose yet. This page now reads only cached values; use a background recompute when you want fresh metrics without slowing the UI.