FAIRMol

Ligand prioritization

Interactive top-50 shortlist per target built from a transparent multi-objective workflow. It combines docking quality, absolute exposed hydrophobic atoms, low strain, safety/ecotox, synthesizability, and native-contact similarity when a native reference exists, then uses Pareto fronts plus a compromise score to expose the most balanced ligands.

DB fairmol
200 shortlisted rows 1 targets
T. brucei TR · T16
T. brucei PDB 6RB5
Protein: Trypanothione reductase
Binding site: Dimer interface (site 2)
Receptor context: 1 cofactors / ions kept for scoring, 0 ligand-like HETATM excluded.
Kept context: A:FAD501
Targets
1
each capped at 50 ligands
Best-pose candidates
630
one best pose per ligand per target
Synth metric
SA score
direct SA metric
Absolute burial proxy
n_exposed
absolute exposed hydrophobic atoms, not fraction
Pareto front 1
37
non-dominated ligands across all selected targets
Burial source
FreeSASA 200
Proxy 0 · Missing 0
Metrics coverage
Done 200
Pending 0 · Failed 0 · Missing 0
Diversity shortlist
Novelty 0.45
High novelty 200 · Close analogs 0
New vs legacy top 50
Added 4 · Dropped 4
Stayed 196 of 200 legacy picks
T16
Native Front 1: 37
200 / 630 shortlisted
Best: OHD_Leishmania_350 · score 55.1
Pareto layers observed: 10
Metrics: done 200 · pending 0 · failed 0 · missing 0
Diversity: novelty 0.45 · close analogs 0
New vs legacy: added 4 · dropped 4 · stayed 196/200
Added: KB_chagas_78, OHD_Leishmania_61, Z56958950 · Dropped: OSA_Lib_227, OSA_Lib_3, OSA_Lib_74
Table view
Switch between a compact decision view, medicinal chemistry properties, and the full docking inspection layout.
Target 2D Rank Pareto Assessment Ligand Compromise Docking Final rank Inter norm n_exposed Strain dE MW cLogP TPSA SA score Safety Native sim PAINS Reactive QED SASA Flags
T16
T16
1 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_350
well-buried hydrophobics, native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 5 protein contact clashes; moderate strain Δ 23.4, geometry warning, and strain ΔE = 23.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 411.7 · logP -5.57 · TPSA 112.5
55.1 0.73 0.4305 -0.8425 0 23.36 411.7 -5.57 112.5 7.553 0.70 0.77 0 0 0.25
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 5 protein contact clashes; moderate strain Δ 23.4
T16
T16
2 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0404
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.0, geometry warning, and strain ΔE = 22.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 298.3 · logP 0.82 · TPSA 120.8
53.7 0.63 2.9705 -1.4437 0 22.03 298.3 0.82 120.8 2.451 0.66 0.45 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.0
T16
T16
3 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45762216
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 1 protein contact clash; moderate strain Δ 21.9, geometry warning, and strain ΔE = 21.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 391.5 · logP 3.81 · TPSA 41.9
53.6 0.65 1.1228 -0.8263 0 21.94 391.5 3.81 41.9 2.815 0.55 0.70 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 16 clashes; 1 protein contact clash; moderate strain Δ 21.9
T16
T16
4 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2022_43
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 21.7, geometry warning, and strain ΔE = 21.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 296.4 · logP 1.83 · TPSA 100.3
53.6 0.63 1.6956 -1.0400 1 21.74 296.4 1.83 100.3 2.834 0.70 0.47 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 21.7
T16
T16
5 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_2655
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 4 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 333.5 · logP 3.22 · TPSA 36.7
52.6 0.65 1.0669 -0.9087 1 15.02 333.5 3.22 36.7 3.299 0.62 0.51 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 4 protein contact clashes
T16
T16
6 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_121
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 7 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 309.4 · logP 3.18 · TPSA 54.9
51.5 0.69 1.0510 -1.0574 3 9.25 309.4 3.18 54.9 1.908 0.62 0.31 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 7 protein contact clashes
T16
T16
7 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0772
strong docking, well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Strong docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 28.0, geometry warning, and strain ΔE = 28.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 280.3 · logP -0.55 · TPSA 153.2
52.2 0.80 1.3724 -1.4469 0 27.98 280.3 -0.55 153.2 3.061 0.53 0.45 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 28.0
T16
T16
8 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC458
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 21.2 and strain ΔE = 21.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 453.6 · logP 4.18 · TPSA 80.4
50.6 0.46 2.3135 -0.7046 3 21.16 453.6 4.18 80.4 5.318 0.51 0.64 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 21.2
T16
T16
9 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_55
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 4 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.5 · logP 3.28 · TPSA 30.9
49.8 0.64 1.3240 -0.9612 2 15.90 321.5 3.28 30.9 4.806 0.65 0.46 0 0 0.92
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 4 protein contact clashes
T16
T16
10 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_975
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 313.4 · logP 4.92 · TPSA 37.9
49.5 0.62 1.7107 -1.0139 4 6.14 313.4 4.92 37.9 3.094 0.62 0.39 0 0 0.52
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash
T16
T16
11 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z62457426
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 6 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 392.3 · logP 5.51 · TPSA 58.0
50.1 0.66 1.3197 -0.9878 0 12.14 392.3 5.51 58.0 1.985 0.32 0.51 0 0 0.45
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 6 protein contact clashes
T16
T16
12 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0823
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 24.9, geometry warning, and strain ΔE = 24.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 280.3 · logP 0.02 · TPSA 150.0
54.3 0.67 1.9998 -1.2587 0 24.94 280.3 0.02 150.0 2.259 0.60 0.46 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 24.9
T16
T16
13 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44089721
well-buried hydrophobics
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 291.4 · logP 2.08 · TPSA 37.6
48.9 0.54 2.4452 -1.0863 1 8.48 291.4 2.08 37.6 3.756 0.73 0.27 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T16
T16
14 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1213671382
reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 308.3 · logP 3.05 · TPSA 90.9
48.9 0.69 1.9406 -1.2367 6 8.98 308.3 3.05 90.9 2.340 0.58 0.31 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash
T16
T16
15 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_102
well-buried hydrophobics
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 310.4 · logP 1.57 · TPSA 50.9
48.0 0.66 1.4129 -1.0797 5 13.78 310.4 1.57 50.9 4.366 0.73 0.33 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 1 protein clash
T16
T16
16 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1310
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 308.3 · logP 1.95 · TPSA 80.0
49.8 0.58 1.9944 -1.0051 6 8.62 308.3 1.95 80.0 2.211 0.70 0.46 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash
T16
T16
17 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z123660746
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 20.9, geometry warning, and strain ΔE = 20.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 360.4 · logP 1.69 · TPSA 95.7
49.7 0.62 2.1061 -1.0685 5 20.91 360.4 1.69 95.7 1.798 0.73 0.32 0 0 0.87
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 20.9
T16
T16
18 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_217
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 309.4 · logP 1.57 · TPSA 95.2
47.4 0.30 4.4700 -0.9957 1 14.42 309.4 1.57 95.2 3.537 0.70 0.74 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 3 protein clashes
T16
T16
19 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_3158
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 17 clashes; 1 protein contact clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 463.5 · logP 7.09 · TPSA 48.5
47.6 0.59 1.3424 -0.6333 7 7.15 463.5 7.09 48.5 2.120 0.36 0.72 0 0 0.28
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 17 clashes; 1 protein contact clash
T16
T16
20 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_67
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; high strain Δ 30.3, geometry warning, and strain ΔE = 30.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 264.8 · logP 2.57 · TPSA 52.6
45.9 0.54 2.7348 -1.2739 3 30.29 264.8 2.57 52.6 2.882 0.76 0.38 0 0 0.89
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; high strain Δ 30.3
T16
T16
21 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_172
well-buried hydrophobics, clean safety profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 364.5 · logP 1.34 · TPSA 30.3
46.3 0.42 3.1152 -0.8545 4 12.25 364.5 1.34 30.3 5.445 0.76 0.63 0 0 0.85
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
T16
T16
22 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_326
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 362.5 · logP 2.96 · TPSA 45.9
45.2 0.50 2.7314 -0.9299 0 14.39 362.5 2.96 45.9 5.010 0.59 0.46 0 0 0.82
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 9 clashes; 1 protein clash
T16
T16
23 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_90
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 5 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.5 · logP 3.81 · TPSA 30.9
48.2 0.65 1.3307 -0.9547 4 17.57 347.5 3.81 30.9 4.718 0.65 0.46 0 0 0.90
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 5 protein contact clashes
T16
T16
24 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_6
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 426.6 · logP 3.13 · TPSA 8.9
44.7 0.47 2.7269 -0.7678 3 17.82 426.6 3.13 8.9 5.221 0.62 0.54 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash
T16
T16
25 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_204
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 431.4 · logP 4.84 · TPSA 24.7
44.3 0.54 2.2803 -0.8308 5 14.46 431.4 4.84 24.7 5.096 0.46 0.61 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash
T16
T16
26 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC1_169
reasonable synthesis profile
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 291.3 · logP 2.70 · TPSA 74.6
42.7 0.38 3.9393 -1.0577 7 4.89 291.3 2.70 74.6 2.040 0.73 0.32 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes
T16
T16
27 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56950529
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 380.4 · logP 3.93 · TPSA 31.4
43.1 0.55 2.2651 -0.9139 3 18.17 380.4 3.93 31.4 2.257 0.47 0.32 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 13 clashes; 1 protein clash
T16
T16
28 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_328
Hydrophobic burial looks adequate: 25% exposed (6/24 atoms). No penalty flagged.
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 6 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 383.0 · logP 2.61 · TPSA 21.1
44.6 0.61 1.2960 -0.8432 6 14.09 383.0 2.61 21.1 5.793 0.65 0.46 0 0 0.81
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 6 protein contact clashes
T16
T16
29 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_496
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 419.5 · logP 4.38 · TPSA 71.7
39.6 0.28 4.0781 -0.7097 2 11.26 419.5 4.38 71.7 3.566 0.40 0.59 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 2 protein clashes
T16
T16
30 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_304
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.6 · logP 3.81 · TPSA 32.7
42.8 0.41 3.7637 -0.9021 2 17.69 398.6 3.81 32.7 4.936 0.62 0.43 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 2 protein clashes
T16
T16
31 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC120
52% of hydrophobic surface appears solvent-exposed (12/23 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 3 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 346.4 · logP 4.31 · TPSA 46.1
40.5 0.65 1.3129 -0.9167 12 6.35 346.4 4.31 46.1 3.530 0.55 0.41 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 15 clashes; 3 protein contact clashes
T16
T16
32 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_214
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 431.5 · logP 3.80 · TPSA 21.1
43.5 0.44 3.2224 -0.8996 5 13.55 431.5 3.80 21.1 5.433 0.65 0.61 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
T16
T16
33 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_379
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 362.6 · logP 2.49 · TPSA 21.1
45.1 0.45 2.6942 -0.8429 0 15.51 362.6 2.49 21.1 5.711 0.65 0.47 0 0 0.84
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 17 clashes; 1 protein clash
T16
T16
34 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_10
clean safety profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 336.5 · logP 1.52 · TPSA 8.9
41.7 0.47 2.7421 -0.9090 10 13.00 336.5 1.52 8.9 5.449 0.76 0.56 0 0 0.84
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T16
T16
35 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_163
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.5 · logP 3.38 · TPSA 19.9
43.4 0.44 3.2130 -0.9066 4 14.75 347.5 3.38 19.9 4.897 0.65 0.47 0 0 0.90
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T16
T16
36 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC223
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 404.9 · logP 2.13 · TPSA 77.8
33.6 0.23 5.3484 -0.9012 9 17.10 404.9 2.13 77.8 3.011 0.55 0.41 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 4 protein clashes
T16
T16
37 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_317
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 383.5 · logP 3.65 · TPSA 19.9
40.9 0.33 3.9478 -0.8372 4 13.77 383.5 3.65 19.9 4.971 0.65 0.51 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T16
T16
38 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z28597610
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 336.4 · logP 4.64 · TPSA 51.2
51.6 0.57 1.8092 -0.9460 1 13.62 336.4 4.64 51.2 2.275 0.62 0.51 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T16
T16
39 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_ACDS_26
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 434.2 · logP 4.55 · TPSA 59.2
50.3 0.66 1.6352 -1.1616 3 15.41 434.2 4.55 59.2 2.985 0.43 0.77 0 0 0.42
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T16
T16
40 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_693
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein contact clashes; moderate strain Δ 21.9, geometry warning, and strain ΔE = 21.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 386.4 · logP 2.41 · TPSA 81.4
50.4 0.68 0.8300 -0.8687 4 21.89 386.4 2.41 81.4 3.446 0.58 0.59 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein contact clashes; moderate strain Δ 21.9
T16
T16
41 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30879667
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 4 protein contact clashes, geometry warning, and strain ΔE = 19.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 423.5 · logP 4.88 · TPSA 56.7
50.2 0.55 1.6832 -0.7225 1 19.69 423.5 4.88 56.7 2.045 0.43 0.68 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 4 protein contact clashes
T16
T16
42 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z69130143
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 311.4 · logP 2.66 · TPSA 71.1
50.7 0.60 2.0223 -1.0810 3 17.01 311.4 2.66 71.1 1.685 0.62 0.45 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash
T16
T16
43 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_MV-35
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash; high strain Δ 32.8, geometry warning, and strain ΔE = 32.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 385.9 · logP 0.85 · TPSA 108.3
49.5 0.52 2.8940 -0.9973 3 32.80 385.9 0.85 108.3 2.936 0.70 0.68 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash; high strain Δ 32.8
T16
T16
44 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56774554
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 426.5 · logP 3.61 · TPSA 94.5
48.1 0.40 2.9340 -0.7619 0 18.67 426.5 3.61 94.5 3.925 0.70 0.64 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 17 clashes; 1 protein clash
T16
T16
45 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_179
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 351.4 · logP 2.96 · TPSA 110.0
47.7 0.48 2.9966 -0.9832 0 17.39 351.4 2.96 110.0 3.231 0.55 0.52 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T16
T16
46 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45875055
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 9 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 433.6 · logP 1.84 · TPSA 71.1
48.1 0.52 2.0159 -0.8118 1 16.50 433.6 1.84 71.1 2.193 0.67 0.41 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 12 clashes; 9 protein contact clashes
T16
T16
47 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z133716394
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 20.3, geometry warning, and strain ΔE = 20.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 374.9 · logP 1.81 · TPSA 97.5
47.6 0.44 3.5612 -1.0715 1 20.33 374.9 1.81 97.5 1.870 0.73 0.31 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 20.3
T16
T16
48 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_98
well-buried hydrophobics, native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 1 protein clash; high strain Δ 33.4, geometry warning, and strain ΔE = 33.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 370.5 · logP 1.83 · TPSA 114.1
47.2 0.56 1.7814 -0.8940 4 33.43 370.5 1.83 114.1 4.287 0.70 0.68 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 1 protein clash; high strain Δ 33.4
T16
T16
49 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z226217786
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 23.8, geometry warning, and strain ΔE = 23.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 380.4 · logP 0.43 · TPSA 101.5
46.8 0.45 2.8763 -0.8150 2 23.81 380.4 0.43 101.5 3.146 0.70 0.42 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 23.8
T16
T16
50 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Babesia_59
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 371.4 · logP 2.53 · TPSA 103.8
46.3 0.51 2.4465 -0.9056 2 14.70 371.4 2.53 103.8 2.915 0.58 0.36 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash
T16
T16
51 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0822
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; high strain Δ 30.5, geometry warning, and strain ΔE = 30.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.3 · logP -0.26 · TPSA 144.0
52.1 0.64 2.0295 -1.2291 0 30.55 281.3 -0.26 144.0 2.358 0.60 0.46 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; high strain Δ 30.5
T16
T16
52 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC1_11
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein contact clash; moderate strain Δ 28.1, geometry warning, and strain ΔE = 28.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 432.3 · logP 5.84 · TPSA 43.2
46.4 0.65 0.9895 -0.8322 2 28.11 432.3 5.84 43.2 3.334 0.28 0.64 0 0 0.39
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein contact clash; moderate strain Δ 28.1
T16
T16
53 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0406
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 20.5, geometry warning, and strain ΔE = 20.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 327.4 · logP 0.46 · TPSA 144.0
49.3 0.56 2.6108 -1.1193 0 20.46 327.4 0.46 144.0 2.569 0.53 0.58 0 0 0.36
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 20.5
T16
T16
54 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_56
Hydrophobic burial looks adequate: 32% exposed (6/19 atoms). No penalty flagged.
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 20.8, geometry warning, and strain ΔE = 20.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 320.4 · logP 3.09 · TPSA 56.9
45.7 0.61 1.3468 -0.9536 6 20.78 320.4 3.09 56.9 3.335 0.62 0.52 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 20.8
T16
T16
55 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1541
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 23.7, geometry warning, and strain ΔE = 23.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 329.4 · logP 3.29 · TPSA 57.8
45.0 0.41 3.4867 -0.9127 3 23.68 329.4 3.29 57.8 3.101 0.62 0.54 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 23.7
T16
T16
56 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29395256
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; high strain Δ 30.9, geometry warning, and strain ΔE = 30.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 325.4 · logP 3.79 · TPSA 57.8
45.5 0.62 1.7220 -1.0885 5 30.86 325.4 3.79 57.8 2.481 0.62 0.43 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; high strain Δ 30.9
T16
T16
57 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_169
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 425.5 · logP 3.31 · TPSA 108.1
43.6 0.49 2.5260 -0.7877 9 18.37 425.5 3.31 108.1 2.209 0.58 0.58 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash
T16
T16
58 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0411
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 21.6, geometry warning, and strain ΔE = 21.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 313.4 · logP 0.81 · TPSA 147.1
46.2 0.65 3.5532 -1.6167 4 21.57 313.4 0.81 147.1 2.745 0.53 0.42 0 0 0.42
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 21.6
T16
T16
59 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_78
41% of hydrophobic surface appears solvent-exposed (9/22 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Good docking score and good contact coverage.
Main concern: geometry warning; 12 clashes; 3 protein contact clashes; moderate strain Δ 21.5, geometry warning, and strain ΔE = 21.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 382.9 · logP 2.88 · TPSA 39.3
42.7 0.66 0.9746 -0.8623 9 21.46 382.9 2.88 39.3 3.842 0.62 0.31 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 3 protein contact clashes; moderate strain Δ 21.5
T16
T16
60 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0552
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 280.3 · logP 0.02 · TPSA 150.0
46.9 0.52 3.5904 -1.3189 0 22.87 280.3 0.02 150.0 2.351 0.53 0.45 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.9
T16
T16
61 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_39
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 332.4 · logP 3.04 · TPSA 46.1
42.2 0.37 3.7000 -0.9452 1 13.17 332.4 3.04 46.1 3.155 0.62 0.25 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes
T16
T16
62 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_136
reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 24.8, geometry warning, and strain ΔE = 24.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 375.5 · logP 3.05 · TPSA 72.9
42.6 0.58 1.6380 -0.9039 6 24.77 375.5 3.05 72.9 3.105 0.65 0.25 0 0 0.89
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 24.8
T16
T16
63 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1134
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 342.4 · logP 2.86 · TPSA 71.2
43.1 0.42 3.4571 -0.9268 5 16.31 342.4 2.86 71.2 3.087 0.62 0.43 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes
T16
T16
64 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z46033750
reasonable synthesis profile
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.4 · logP 3.94 · TPSA 76.0
43.2 0.53 2.1492 -0.8864 9 16.73 352.4 3.94 76.0 2.395 0.73 0.29 0 0 0.82
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T16
T16
65 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_176
well-buried hydrophobics, clean safety profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 377.5 · logP 1.89 · TPSA 42.8
45.8 0.41 3.1793 -0.8417 4 12.68 377.5 1.89 42.8 4.997 0.76 0.61 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T16
T16
66 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_189
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 372.5 · logP 4.26 · TPSA 49.4
40.4 0.51 2.1156 -0.8181 8 12.44 372.5 4.26 49.4 2.334 0.43 0.45 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 1 protein clash
T16
T16
67 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_72
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 479.3 · logP 4.12 · TPSA 16.5
42.0 0.49 2.9072 -0.9619 2 13.05 479.3 4.12 16.5 4.821 0.32 0.61 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T16
T16
68 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_MV-36
40% of hydrophobic surface appears solvent-exposed (8/20 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash; high strain Δ 38.1, geometry warning, and strain ΔE = 38.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 350.5 · logP -0.90 · TPSA 83.7
40.4 0.54 2.7893 -1.0106 8 38.09 350.5 -0.90 83.7 5.080 0.70 0.45 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash; high strain Δ 38.1
T16
T16
69 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56765438
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 324.3 · logP 3.45 · TPSA 87.6
39.0 0.35 4.1717 -0.9922 8 12.46 324.3 3.45 87.6 2.842 0.58 0.46 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T16
T16
70 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_323
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 390.4 · logP 4.15 · TPSA 19.9
41.2 0.42 3.2288 -0.8884 2 13.48 390.4 4.15 19.9 4.765 0.46 0.47 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T16
T16
71 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_52
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 5 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 361.6 · logP 4.20 · TPSA 30.9
48.0 0.63 1.6013 -0.9598 0 17.87 361.6 4.20 30.9 4.703 0.46 0.45 0 0 0.87
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 5 protein contact clashes
T16
T16
72 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_206
45% of hydrophobic surface appears solvent-exposed (10/22 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 404.4 · logP 3.43 · TPSA 33.5
40.1 0.48 2.7556 -0.9070 10 11.53 404.4 3.43 33.5 4.744 0.65 0.52 0 0 0.81
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T16
T16
73 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56071437
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 3 protein contact clashes; moderate strain Δ 23.4, geometry warning, and strain ΔE = 23.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 500.5 · logP 5.50 · TPSA 87.3
37.1 0.63 1.3105 -0.7543 8 23.45 500.5 5.50 87.3 2.274 0.08 0.57 0 0 0.47
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 14 clashes; 3 protein contact clashes; moderate strain Δ 23.4
T16
T16
74 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_167
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 430.4 · logP 4.82 · TPSA 16.5
40.9 0.45 3.1734 -0.9017 5 13.44 430.4 4.82 16.5 4.989 0.46 0.61 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes
T16
T16
75 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_168
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 417.4 · logP 3.41 · TPSA 21.1
45.9 0.55 2.2641 -1.0115 0 17.41 417.4 3.41 21.1 5.791 0.65 0.45 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T16
T16
76 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_150
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 348.5 · logP 2.10 · TPSA 21.1
45.6 0.51 2.2203 -0.9558 0 16.85 348.5 2.10 21.1 5.768 0.65 0.47 0 0 0.85
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T16
T16
77 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_169
45% of hydrophobic surface appears solvent-exposed (10/22 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 391.4 · logP 2.87 · TPSA 21.1
39.6 0.46 2.9936 -0.9269 10 12.02 391.4 2.87 21.1 5.231 0.65 0.54 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T16
T16
78 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_321
Hydrophobic burial looks adequate: 24% exposed (6/25 atoms). No penalty flagged.
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 7 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 430.4 · logP 5.07 · TPSA 19.9
40.5 0.59 1.5886 -0.8291 6 14.81 430.4 5.07 19.9 4.655 0.35 0.46 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 7 protein contact clashes
T16
T16
79 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_160
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 382.0 · logP 4.03 · TPSA 19.9
40.9 0.44 2.9742 -0.8560 4 14.74 382.0 4.03 19.9 4.929 0.46 0.56 0 0 0.85
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T16
T16
80 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_ACDS_27
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 528.2 · logP 4.23 · TPSA 59.2
35.7 0.52 2.7068 -1.0334 12 6.72 528.2 4.23 59.2 3.171 0.28 0.56 0 0 0.33
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T16
T16
81 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_27
Hydrophobic burial looks adequate: 25% exposed (6/24 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 417.4 · logP 3.41 · TPSA 21.1
41.2 0.48 2.5499 -0.8571 6 14.82 417.4 3.41 21.1 5.484 0.65 0.46 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T16
T16
82 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_322
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.4 · logP 4.68 · TPSA 19.9
40.7 0.47 2.9193 -0.9044 4 14.77 416.4 4.68 19.9 4.985 0.46 0.47 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T16
T16
83 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_233
clean safety profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 23.7, geometry warning, and strain ΔE = 23.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 377.6 · logP 1.25 · TPSA 24.3
36.9 0.42 3.1399 -0.8445 13 23.71 377.6 1.25 24.3 5.406 0.76 0.63 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 23.7
T16
T16
84 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_75
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 430.4 · logP 4.82 · TPSA 16.5
39.6 0.48 2.5169 -0.8032 5 15.49 430.4 4.82 16.5 4.989 0.46 0.45 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T16
T16
85 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_159
Hydrophobic burial looks adequate: 24% exposed (6/25 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 11 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 430.4 · logP 5.07 · TPSA 19.9
37.6 0.49 2.3642 -0.7831 6 15.35 430.4 5.07 19.9 4.633 0.35 0.46 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 11 protein contact clashes
T16
T16
86 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_MAC_39
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 4 protein contact clashes; moderate strain Δ 26.3, geometry warning, and strain ΔE = 26.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 376.8 · logP 3.66 · TPSA 100.9
53.0 0.62 1.2580 -0.8679 0 26.26 376.8 3.66 100.9 2.634 0.58 0.65 0 0 0.40
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 4 protein contact clashes; moderate strain Δ 26.3
T16
T16
87 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44831334
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 5 protein contact clashes; moderate strain Δ 26.5, geometry warning, and strain ΔE = 26.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 374.4 · logP 3.31 · TPSA 106.3
50.2 0.58 1.6489 -0.8307 3 26.53 374.4 3.31 106.3 2.214 0.55 0.65 0 0 0.39
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 5 protein contact clashes; moderate strain Δ 26.5
T16
T16
88 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC2_12
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash; high strain Δ 31.3, geometry warning, and strain ΔE = 31.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 328.4 · logP 3.68 · TPSA 64.8
46.8 0.49 2.5080 -0.9189 2 31.27 328.4 3.68 64.8 3.488 0.62 0.65 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash; high strain Δ 31.3
T16
T16
89 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_66
well-buried hydrophobics, native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 490.0 · logP 3.32 · TPSA 102.1
46.0 0.59 1.1027 -0.6698 5 17.59 490.0 3.32 102.1 3.404 0.44 0.68 0 0 0.43
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein contact clashes
T16
T16
90 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_148
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 2 protein contact clashes; moderate strain Δ 21.1, geometry warning, and strain ΔE = 21.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 463.6 · logP 4.06 · TPSA 69.7
45.7 0.63 1.1010 -0.7823 4 21.05 463.6 4.06 69.7 1.960 0.28 0.60 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 2 protein contact clashes; moderate strain Δ 21.1
T16
T16
91 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z24132888
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 437.9 · logP 4.68 · TPSA 110.5
44.3 0.46 2.5427 -0.7727 2 18.57 437.9 4.68 110.5 2.454 0.40 0.57 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 1 protein clash
T16
T16
92 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_93
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 5 protein contact clashes; high strain Δ 36.8, geometry warning, and strain ΔE = 36.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 361.4 · logP 3.55 · TPSA 74.2
44.1 0.60 1.2500 -0.8968 4 36.82 361.4 3.55 74.2 2.708 0.62 0.41 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 5 protein contact clashes; high strain Δ 36.8
T16
T16
93 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56920485
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 28.1, geometry warning, and strain ΔE = 28.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 348.4 · logP 1.17 · TPSA 92.0
43.2 0.34 4.2218 -0.9640 4 28.10 348.4 1.17 92.0 3.762 0.70 0.63 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 28.1
T16
T16
94 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_8
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 469.6 · logP 1.01 · TPSA 72.0
43.3 0.41 2.8124 -0.7080 3 18.18 469.6 1.01 72.0 4.841 0.66 0.52 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash
T16
T16
95 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_119
well-buried hydrophobics
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 343.5 · logP 2.11 · TPSA 65.5
43.7 0.56 1.8147 -0.9644 4 18.07 343.5 2.11 65.5 3.696 0.62 0.33 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash
T16
T16
96 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z87656593
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 24.5, geometry warning, and strain ΔE = 24.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 421.5 · logP 2.13 · TPSA 109.6
44.6 0.57 2.0832 -0.9348 4 24.46 421.5 2.13 109.6 2.563 0.58 0.31 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 24.5
T16
T16
97 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_28
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 18 clashes; 4 protein contact clashes; moderate strain Δ 21.0, geometry warning, and strain ΔE = 21.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 422.6 · logP 3.87 · TPSA 21.1
45.3 0.52 1.8550 -0.7389 5 20.99 422.6 3.87 21.1 5.014 0.62 0.70 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 18 clashes; 4 protein contact clashes; moderate strain Δ 21.0
T16
T16
98 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
GemmaOHDUnisi_36
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 385.4 · logP 4.86 · TPSA 82.7
43.0 0.43 3.1272 -0.8692 6 13.98 385.4 4.86 82.7 2.457 0.51 0.62 0 0 0.35
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
T16
T16
99 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_97
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein clashes; moderate strain Δ 23.4, geometry warning, and strain ΔE = 23.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 411.5 · logP 3.53 · TPSA 94.5
44.8 0.30 4.1587 -0.8476 0 23.42 411.5 3.53 94.5 3.083 0.55 0.77 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 3 protein clashes; moderate strain Δ 23.4
T16
T16
100 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_2876
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 27.8, geometry warning, and strain ΔE = 27.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 270.3 · logP 0.54 · TPSA 97.1
44.4 0.46 3.7732 -1.2365 2 27.85 270.3 0.54 97.1 2.514 0.67 0.45 0 0 0.43
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 9 clashes; 3 protein clashes; moderate strain Δ 27.8
T16
T16
101 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_128
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 25.7, geometry warning, and strain ΔE = 25.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 299.4 · logP 2.93 · TPSA 86.0
42.3 0.39 3.9238 -1.1556 3 25.70 299.4 2.93 86.0 2.344 0.70 0.39 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 25.7
T16
T16
102 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_44
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 28.9, geometry warning, and strain ΔE = 28.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 404.5 · logP 3.29 · TPSA 64.9
43.1 0.48 2.6303 -0.7899 6 28.91 404.5 3.29 64.9 3.195 0.58 0.57 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash; moderate strain Δ 28.9
T16
T16
103 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_303
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.6 · logP 3.42 · TPSA 29.4
44.3 0.47 2.7174 -0.8372 1 17.05 398.6 3.42 29.4 5.146 0.62 0.42 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T16
T16
104 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30953926
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 31.3, geometry warning, and strain ΔE = 31.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 405.5 · logP 3.24 · TPSA 69.7
41.7 0.49 2.6007 -0.8267 9 31.30 405.5 3.24 69.7 2.070 0.65 0.45 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 31.3
T16
T16
105 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_60
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 26.2, geometry warning, and strain ΔE = 26.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 3.08 · TPSA 73.4
41.7 0.47 2.9145 -0.9472 4 26.22 344.4 3.08 73.4 4.515 0.62 0.43 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 26.2
T16
T16
106 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1675
38% of hydrophobic surface appears solvent-exposed (10/26 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 21.4, geometry warning, and strain ΔE = 21.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 442.5 · logP 1.63 · TPSA 70.8
40.8 0.43 2.7559 -0.7353 10 21.42 442.5 1.63 70.8 3.615 0.73 0.57 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 21.4
T16
T16
107 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0959
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 28.7, geometry warning, and strain ΔE = 28.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 403.5 · logP 2.03 · TPSA 144.0
44.1 0.43 3.3870 -0.9248 0 28.75 403.5 2.03 144.0 2.431 0.39 0.73 0 0 0.28
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 28.7
T16
T16
108 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z31413736
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 25.0, geometry warning, and strain ΔE = 25.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 389.8 · logP 0.89 · TPSA 149.4
41.5 0.31 4.4157 -1.0012 1 25.01 389.8 0.89 149.4 1.905 0.63 0.31 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 25.0
T16
T16
109 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_37
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 454.6 · logP 5.31 · TPSA 70.5
40.3 0.50 2.3107 -0.7612 4 16.60 454.6 5.31 70.5 3.044 0.17 0.65 0 0 0.48
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash
T16
T16
110 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0409
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.0, geometry warning, and strain ΔE = 25.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 313.4 · logP 0.40 · TPSA 146.9
47.1 0.62 2.9517 -1.4334 0 24.99 313.4 0.40 146.9 2.609 0.53 0.38 0 0 0.41
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.0
T16
T16
111 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0562
reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 322.4 · logP 0.40 · TPSA 153.1
41.7 0.42 3.5855 -1.0463 6 17.01 322.4 0.40 153.1 2.214 0.60 0.39 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 3 protein clashes
T16
T16
112 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC234
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 2 protein clashes; moderate strain Δ 25.7, geometry warning, and strain ΔE = 25.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 371.5 · logP 1.99 · TPSA 83.8
42.0 0.43 3.2898 -0.8873 8 25.66 371.5 1.99 83.8 2.896 0.70 0.49 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 2 protein clashes; moderate strain Δ 25.7
T16
T16
113 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC232
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 18 clashes; 2 protein clashes; high strain Δ 49.5, geometry warning, and strain ΔE = 49.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.5 · logP 1.49 · TPSA 87.0
44.6 0.40 3.5727 -0.9089 1 49.52 400.5 1.49 87.0 3.022 0.66 0.65 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 18 clashes; 2 protein clashes; high strain Δ 49.5
T16
T16
114 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_89
Hydrophobic burial looks adequate: 34% exposed (10/29 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 2 protein contact clashes; moderate strain Δ 29.4, geometry warning, and strain ΔE = 29.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 461.7 · logP 1.98 · TPSA 40.0
39.1 0.53 1.4862 -0.6935 10 29.44 461.7 1.98 40.0 4.956 0.70 0.51 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 2 protein contact clashes; moderate strain Δ 29.4
T16
T16
115 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0566
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 20.4, geometry warning, and strain ΔE = 20.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 280.3 · logP 0.02 · TPSA 150.0
43.2 0.44 3.8197 -1.2694 0 20.39 280.3 0.02 150.0 2.318 0.53 0.42 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 20.4
T16
T16
116 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_132
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 474.6 · logP 3.63 · TPSA 93.5
44.9 0.44 2.6804 -0.7117 3 18.14 474.6 3.63 93.5 2.097 0.44 0.64 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 1 protein clash
T16
T16
117 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_211
Hydrophobic burial looks adequate: 30% exposed (7/23 atoms). No penalty flagged.
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash; high strain Δ 41.7, geometry warning, and strain ΔE = 41.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 375.5 · logP 2.76 · TPSA 60.6
35.8 0.47 2.2474 -0.8204 7 41.70 375.5 2.76 60.6 3.792 0.65 0.31 0 0 0.87
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; high strain Δ 41.7
T16
T16
118 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY1004
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 28.7, geometry warning, and strain ΔE = 28.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 312.4 · logP 0.87 · TPSA 117.9
44.1 0.42 3.9041 -1.1400 5 28.73 312.4 0.87 117.9 2.415 0.73 0.42 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 28.7
T16
T16
119 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_153
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 404.4 · logP 4.39 · TPSA 37.0
40.0 0.39 3.4238 -0.8687 2 13.60 404.4 4.39 37.0 4.799 0.46 0.45 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 2 protein clashes
T16
T16
120 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_175
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 403.5 · logP 2.84 · TPSA 122.0
36.4 0.33 3.9618 -0.7911 11 14.63 403.5 2.84 122.0 3.548 0.52 0.68 0 0 0.38
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes
T16
T16
121 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_157
Hydrophobic burial looks adequate: 22% exposed (6/27 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 25.5, geometry warning, and strain ΔE = 25.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 422.6 · logP 3.55 · TPSA 43.1
41.4 0.42 3.0000 -0.7362 6 25.52 422.6 3.55 43.1 4.999 0.65 0.57 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 25.5
T16
T16
122 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_4
40% of hydrophobic surface appears solvent-exposed (12/30 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 4 protein contact clashes; high strain Δ 31.5, geometry warning, and strain ΔE = 31.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 445.7 · logP 2.52 · TPSA 12.1
38.0 0.61 1.1134 -0.7376 12 31.49 445.7 2.52 12.1 5.619 0.62 0.52 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 4 protein contact clashes; high strain Δ 31.5
T16
T16
123 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_118
45% of hydrophobic surface appears solvent-exposed (10/22 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 390.4 · logP 3.90 · TPSA 16.5
40.8 0.47 2.9318 -0.9339 10 12.76 390.4 3.90 16.5 4.721 0.65 0.61 0 0 0.81
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T16
T16
124 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_260
Hydrophobic burial looks adequate: 32% exposed (9/28 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash; high strain Δ 46.9, geometry warning, and strain ΔE = 46.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 419.7 · logP 1.84 · TPSA 12.1
36.6 0.45 2.3441 -0.7519 9 46.92 419.7 1.84 12.1 5.566 0.73 0.64 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash; high strain Δ 46.9
T16
T16
125 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_71
well-buried hydrophobics, clean safety profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 24.6, geometry warning, and strain ΔE = 24.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 382.5 · logP 1.58 · TPSA 39.5
40.1 0.37 3.5807 -0.8772 4 24.62 382.5 1.58 39.5 5.082 0.76 0.37 0 0 0.82
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 2 protein clashes; moderate strain Δ 24.6
T16
T16
126 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_272
Hydrophobic burial looks adequate: 29% exposed (8/28 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 22.4, geometry warning, and strain ΔE = 22.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 434.7 · logP 0.65 · TPSA 24.2
37.5 0.38 3.6418 -0.7752 8 22.39 434.7 0.65 24.2 5.981 0.73 0.45 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 22.4
T16
T16
127 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_330
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 417.4 · logP 3.41 · TPSA 21.1
39.3 0.28 4.1216 -0.8692 0 18.06 417.4 3.41 21.1 5.547 0.65 0.47 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 3 protein clashes
T16
T16
128 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_382
Hydrophobic burial looks adequate: 24% exposed (6/25 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 362.5 · logP 3.54 · TPSA 24.7
40.1 0.39 3.4035 -0.8650 6 16.68 362.5 3.54 24.7 5.286 0.65 0.52 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 2 protein clashes
T16
T16
129 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_MV-42
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; high strain Δ 35.8, geometry warning, and strain ΔE = 35.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 364.5 · logP -0.59 · TPSA 83.7
41.2 0.35 4.2657 -0.9644 1 35.78 364.5 -0.59 83.7 5.083 0.70 0.45 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; high strain Δ 35.8
T16
T16
130 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_12
52% of hydrophobic surface appears solvent-exposed (13/25 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 431.5 · logP 3.36 · TPSA 8.9
37.0 0.46 3.0180 -0.8801 13 13.10 431.5 3.36 8.9 5.721 0.65 0.61 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T16
T16
131 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_378
50% of hydrophobic surface appears solvent-exposed (13/26 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 25.4, geometry warning, and strain ΔE = 25.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 408.6 · logP 1.45 · TPSA 35.2
35.5 0.40 3.3584 -0.7807 13 25.42 408.6 1.45 35.2 5.435 0.73 0.56 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 25.4
T16
T16
132 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_238
45% of hydrophobic surface appears solvent-exposed (13/29 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 4 protein contact clashes; moderate strain Δ 27.8, geometry warning, and strain ΔE = 27.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 431.7 · logP 2.38 · TPSA 20.9
34.9 0.55 1.6024 -0.7128 13 27.80 431.7 2.38 20.9 6.188 0.62 0.46 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 4 protein contact clashes; moderate strain Δ 27.8
T16
T16
133 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_186
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 18 clashes; 5 protein contact clashes; moderate strain Δ 23.7, geometry warning, and strain ΔE = 23.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 502.7 · logP 1.49 · TPSA 41.2
32.3 0.44 2.1525 -0.6296 17 23.73 502.7 1.49 41.2 5.817 0.70 0.68 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 18 clashes; 5 protein contact clashes; moderate strain Δ 23.7
T16
T16
134 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_54
clean safety profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 3 protein clashes; moderate strain Δ 23.3, geometry warning, and strain ΔE = 23.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 406.6 · logP 1.94 · TPSA 58.4
31.9 0.24 4.6481 -0.8213 11 23.26 406.6 1.94 58.4 5.458 0.76 0.50 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 3 protein clashes; moderate strain Δ 23.3
T16
T16
135 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_67
50% of hydrophobic surface appears solvent-exposed (12/24 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 485.3 · logP 5.74 · TPSA 16.5
30.6 0.48 3.0185 -0.9089 12 14.56 485.3 5.74 16.5 5.157 0.20 0.61 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T16
T16
136 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56850314
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 27.9, geometry warning, and strain ΔE = 27.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 349.4 · logP 4.30 · TPSA 78.3
48.8 0.58 1.8738 -0.9532 1 27.87 349.4 4.30 78.3 2.944 0.58 0.51 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 27.9
T16
T16
137 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_83
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 21.9, geometry warning, and strain ΔE = 21.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 325.4 · logP 0.72 · TPSA 103.1
46.4 0.40 3.8564 -1.0361 4 21.86 325.4 0.72 103.1 3.918 0.66 0.80 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 21.9
T16
T16
138 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z25399134
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 23.9, geometry warning, and strain ΔE = 23.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 310.4 · logP 3.20 · TPSA 70.7
44.2 0.46 3.1496 -1.0633 4 23.94 310.4 3.20 70.7 2.071 0.62 0.42 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 23.9
T16
T16
139 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56911531
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 2 protein clashes; high strain Δ 31.5, geometry warning, and strain ΔE = 31.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.4 · logP 2.81 · TPSA 90.3
46.2 0.60 2.2557 -1.1221 4 31.53 347.4 2.81 90.3 2.994 0.58 0.51 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 2 protein clashes; high strain Δ 31.5
T16
T16
140 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_3
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 26.5, geometry warning, and strain ΔE = 26.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 454.0 · logP 3.29 · TPSA 73.5
43.5 0.48 2.5340 -0.8038 3 26.51 454.0 3.29 73.5 2.880 0.44 0.62 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 26.5
T16
T16
141 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57325700
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 23.9, geometry warning, and strain ΔE = 23.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 343.4 · logP 4.54 · TPSA 59.4
44.3 0.44 2.9988 -0.8853 4 23.93 343.4 4.54 59.4 2.830 0.62 0.51 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 23.9
T16
T16
142 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1575277625
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; high strain Δ 32.1, geometry warning, and strain ΔE = 32.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 421.4 · logP 1.63 · TPSA 118.4
42.3 0.38 3.6100 -0.8888 2 32.11 421.4 1.63 118.4 3.394 0.58 0.54 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; high strain Δ 32.1
T16
T16
143 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_MAC_38
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 4 protein contact clashes; moderate strain Δ 27.2, geometry warning, and strain ΔE = 27.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 393.8 · logP 4.40 · TPSA 88.0
49.2 0.60 1.3669 -0.8423 0 27.19 393.8 4.40 88.0 2.507 0.40 0.65 0 0 0.39
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 4 protein contact clashes; moderate strain Δ 27.2
T16
T16
144 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z48973074
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 16 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 423.3 · logP 5.23 · TPSA 52.6
40.6 0.45 2.6373 -0.8652 1 18.90 423.3 5.23 52.6 2.676 0.32 0.45 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 1 protein clash
T16
T16
145 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56771875
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 22.8, geometry warning, and strain ΔE = 22.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 361.8 · logP 2.94 · TPSA 89.0
41.0 0.42 3.6181 -1.0136 5 22.85 361.8 2.94 89.0 2.149 0.58 0.31 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 22.8
T16
T16
146 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_17
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 26.6, geometry warning, and strain ΔE = 26.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.5 · logP 1.13 · TPSA 123.8
40.0 0.24 4.4216 -0.8294 0 26.60 400.5 1.13 123.8 3.166 0.63 0.48 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 26.6
T16
T16
147 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0616
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 23.9, geometry warning, and strain ΔE = 23.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 423.5 · logP 2.15 · TPSA 147.0
43.1 0.38 3.6842 -0.8867 2 23.94 423.5 2.15 147.0 2.658 0.45 0.65 0 0 0.52
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 23.9
T16
T16
148 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29324102
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash; high strain Δ 35.0, geometry warning, and strain ΔE = 35.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.5 · logP 2.55 · TPSA 82.6
44.1 0.56 2.0333 -0.8827 7 34.98 394.5 2.55 82.6 2.279 0.62 0.46 0 0 0.84
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; high strain Δ 35.0
T16
T16
149 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1741977105
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 20.1, geometry warning, and strain ΔE = 20.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 379.5 · logP 4.36 · TPSA 38.8
38.0 0.40 2.9896 -0.8337 3 20.11 379.5 4.36 38.8 2.677 0.43 0.32 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 20.1
T16
T16
150 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0976
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 30.1, geometry warning, and strain ΔE = 30.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 388.5 · logP 2.45 · TPSA 117.9
46.4 0.35 3.7336 -0.8904 0 30.10 388.5 2.45 117.9 2.252 0.58 0.70 0 0 0.44
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 30.1
T16
T16
151 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56174642
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 26.7, geometry warning, and strain ΔE = 26.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 329.4 · logP 3.35 · TPSA 72.2
43.9 0.44 2.9944 -0.9612 1 26.73 329.4 3.35 72.2 3.663 0.62 0.47 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 26.7
T16
T16
152 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0555
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; high strain Δ 31.1, geometry warning, and strain ΔE = 31.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 296.3 · logP -0.68 · TPSA 170.0
45.6 0.56 3.2560 -1.3584 0 31.13 296.3 -0.68 170.0 2.520 0.53 0.42 0 0 0.47
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 6 clashes; 3 protein clashes; high strain Δ 31.1
T16
T16
153 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0565
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; high strain Δ 30.4, geometry warning, and strain ΔE = 30.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.3 · logP 0.15 · TPSA 144.2
43.8 0.48 3.6275 -1.2811 0 30.41 281.3 0.15 144.2 2.469 0.53 0.45 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 6 clashes; 3 protein clashes; high strain Δ 30.4
T16
T16
154 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_265
Hydrophobic burial looks adequate: 32% exposed (10/31 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 15 clashes; 4 protein contact clashes; moderate strain Δ 24.0, geometry warning, and strain ΔE = 24.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 472.7 · logP 3.71 · TPSA 28.0
38.4 0.54 1.6160 -0.6824 10 23.98 472.7 3.71 28.0 5.335 0.50 0.64 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 4 protein contact clashes; moderate strain Δ 24.0
T16
T16
155 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0615
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.1, geometry warning, and strain ΔE = 25.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 417.5 · logP 2.07 · TPSA 144.0
42.2 0.40 3.3687 -0.8520 1 25.15 417.5 2.07 144.0 2.457 0.39 0.73 0 0 0.26
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.1
T16
T16
156 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_316
Hydrophobic burial looks adequate: 28% exposed (8/29 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 427.6 · logP 2.76 · TPSA 44.1
40.6 0.51 2.2052 -0.8035 8 19.79 427.6 2.76 44.1 5.217 0.62 0.57 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T16
T16
157 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_205
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 1 protein clash; moderate strain Δ 22.4, geometry warning, and strain ΔE = 22.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 430.4 · logP 4.92 · TPSA 37.0
38.3 0.41 3.2337 -0.8337 4 22.35 430.4 4.92 37.0 5.091 0.46 0.52 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 17 clashes; 1 protein clash; moderate strain Δ 22.4
T16
T16
158 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_25
42% of hydrophobic surface appears solvent-exposed (10/24 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 349.5 · logP 3.21 · TPSA 16.5
40.4 0.46 2.9479 -0.9097 10 13.45 349.5 3.21 16.5 4.694 0.65 0.61 0 0 0.87
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T16
T16
159 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_281
Hydrophobic burial looks adequate: 32% exposed (9/28 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 24.3, geometry warning, and strain ΔE = 24.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 418.6 · logP 3.31 · TPSA 19.7
35.1 0.40 3.2625 -0.7519 9 24.34 418.6 3.31 19.7 5.545 0.62 0.42 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 24.3
T16
T16
160 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_384
Hydrophobic burial looks adequate: 25% exposed (6/24 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 364.5 · logP 2.38 · TPSA 33.9
39.1 0.38 3.6080 -0.8988 6 16.68 364.5 2.38 33.9 5.328 0.65 0.52 0 0 0.88
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 17 clashes; 2 protein clashes
T16
T16
161 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC230
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; high strain Δ 36.5, geometry warning, and strain ΔE = 36.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 387.5 · logP -0.32 · TPSA 88.2
39.4 0.31 3.8948 -0.8673 2 36.46 387.5 -0.32 88.2 4.278 0.70 0.52 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; high strain Δ 36.5
T16
T16
162 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_9
Hydrophobic burial looks adequate: 29% exposed (8/28 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes; high strain Δ 37.4, geometry warning, and strain ΔE = 37.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 419.7 · logP 1.98 · TPSA 12.1
37.9 0.39 3.4089 -0.8155 8 37.37 419.7 1.98 12.1 5.383 0.73 0.61 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; high strain Δ 37.4
T16
T16
163 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_254
39% of hydrophobic surface appears solvent-exposed (12/31 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 3 protein contact clashes; moderate strain Δ 29.5, geometry warning, and strain ΔE = 29.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 459.7 · logP 2.77 · TPSA 12.1
36.6 0.60 0.9934 -0.6714 12 29.51 459.7 2.77 12.1 5.733 0.58 0.47 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 3 protein contact clashes; moderate strain Δ 29.5
T16
T16
164 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_119
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 375.5 · logP 4.01 · TPSA 37.0
37.1 0.35 3.6874 -0.8257 5 15.02 375.5 4.01 37.0 5.008 0.46 0.52 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 2 protein clashes
T16
T16
165 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_225
42% of hydrophobic surface appears solvent-exposed (14/33 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 5 protein contact clashes; high strain Δ 33.0, geometry warning, and strain ΔE = 33.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 517.8 · logP 1.21 · TPSA 18.6
35.7 0.52 1.8768 -0.6814 14 33.00 517.8 1.21 18.6 5.597 0.70 0.62 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 5 protein contact clashes; high strain Δ 33.0
T16
T16
166 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_ACDS_36
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 8 protein contact clashes, geometry warning, and strain ΔE = 18.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 538.3 · logP 6.38 · TPSA 48.2
34.2 0.57 1.8291 -0.9011 11 18.82 538.3 6.38 48.2 3.157 0.07 0.77 0 0 0.22
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 8 protein contact clashes
T16
T16
167 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_7
52% of hydrophobic surface appears solvent-exposed (13/25 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 362.6 · logP 2.05 · TPSA 8.9
36.5 0.43 3.0355 -0.8600 13 13.44 362.6 2.05 8.9 5.698 0.65 0.63 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T16
T16
168 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_230
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash; high strain Δ 39.7, geometry warning, and strain ΔE = 39.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 475.7 · logP 0.25 · TPSA 16.6
37.0 0.47 2.2462 -0.6756 10 39.66 475.7 0.25 16.6 6.579 0.70 0.65 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; high strain Δ 39.7
T16
T16
169 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_264
45% of hydrophobic surface appears solvent-exposed (14/31 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 26.5, geometry warning, and strain ΔE = 26.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 488.7 · logP 1.05 · TPSA 32.4
32.0 0.41 2.7215 -0.6596 14 26.48 488.7 1.05 32.4 6.033 0.73 0.46 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 1 protein clash; moderate strain Δ 26.5
T16
T16
170 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_209
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 430.4 · logP 4.92 · TPSA 37.0
35.4 0.29 4.4785 -0.8658 4 14.58 430.4 4.92 37.0 5.091 0.46 0.48 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 3 protein clashes
T16
T16
171 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_50
47% of hydrophobic surface appears solvent-exposed (15/32 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 16 clashes; 3 protein clashes; moderate strain Δ 27.5, geometry warning, and strain ΔE = 27.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 502.7 · logP 1.49 · TPSA 41.2
28.0 0.23 4.7112 -0.6843 15 27.52 502.7 1.49 41.2 5.801 0.70 0.59 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 16 clashes; 3 protein clashes; moderate strain Δ 27.5
T16
T16
172 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2022_22
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 24.7, geometry warning, and strain ΔE = 24.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 418.5 · logP 1.60 · TPSA 126.5
42.1 0.37 3.2911 -0.7589 5 24.71 418.5 1.60 126.5 3.557 0.63 0.65 0 0 0.41
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 24.7
T16
T16
173 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56890899
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash; high strain Δ 32.8, geometry warning, and strain ΔE = 32.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 418.5 · logP 4.07 · TPSA 84.8
40.9 0.45 2.6360 -0.7642 1 32.80 418.5 4.07 84.8 2.288 0.36 0.41 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash; high strain Δ 32.8
T16
T16
174 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC2_68
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 21.7, geometry warning, and strain ΔE = 21.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 387.5 · logP 3.51 · TPSA 93.3
40.9 0.41 3.5108 -0.9432 7 21.69 387.5 3.51 93.3 2.332 0.58 0.51 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 21.7
T16
T16
175 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_66
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 26.9, geometry warning, and strain ΔE = 26.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 458.5 · logP 3.20 · TPSA 65.5
39.8 0.43 2.6868 -0.7274 8 26.85 458.5 3.20 65.5 2.663 0.44 0.77 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 26.9
T16
T16
176 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_85
reasonable synthesis profile
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 3 clashes; 2 protein clashes; moderate strain Δ 26.8, geometry warning, and strain ΔE = 26.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 328.4 · logP 3.05 · TPSA 62.5
39.1 0.51 2.6602 -1.0372 8 26.82 328.4 3.05 62.5 2.788 0.62 0.32 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 2 protein clashes; moderate strain Δ 26.8
T16
T16
177 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK219
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 7 protein contact clashes; moderate strain Δ 20.5, geometry warning, and strain ΔE = 20.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 437.5 · logP 4.28 · TPSA 100.6
37.6 0.49 1.8299 -0.7197 11 20.54 437.5 4.28 100.6 3.480 0.48 0.68 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 7 protein contact clashes; moderate strain Δ 20.5
T16
T16
178 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_404
40% of hydrophobic surface appears solvent-exposed (12/30 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 25.6 and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 466.7 · logP 6.30 · TPSA 63.6
36.3 0.44 2.2884 -0.6788 12 25.61 466.7 6.30 63.6 5.379 0.40 0.38 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 25.6
T16
T16
179 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z219578626
reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; high strain Δ 37.0, geometry warning, and strain ΔE = 37.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.8 · logP 3.84 · TPSA 66.9
38.2 0.48 2.3936 -0.7964 6 36.98 428.8 3.84 66.9 2.341 0.50 0.33 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; high strain Δ 37.0
T16
T16
180 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0625
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; high strain Δ 32.1, geometry warning, and strain ΔE = 32.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 403.5 · logP 2.03 · TPSA 144.0
41.7 0.39 3.4110 -0.8552 1 32.15 403.5 2.03 144.0 2.418 0.39 0.73 0 0 0.28
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 10 clashes; 2 protein clashes; high strain Δ 32.1
T16
T16
181 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_292
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 15 clashes; 3 protein contact clashes; moderate strain Δ 25.3, geometry warning, and strain ΔE = 25.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 460.0 · logP 4.64 · TPSA 46.8
35.5 0.51 1.5663 -0.6930 10 25.25 460.0 4.64 46.8 3.492 0.28 0.70 0 0 0.42
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 3 protein contact clashes; moderate strain Δ 25.3
T16
T16
182 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_34
well-buried hydrophobics
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes; high strain Δ 46.3, geometry warning, and strain ΔE = 46.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 313.3 · logP 0.51 · TPSA 136.4
34.5 0.38 3.6819 -1.1311 4 46.28 313.3 0.51 136.4 3.635 0.66 0.32 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; high strain Δ 46.3
T16
T16
183 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_ACDS_48
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 31.3, geometry warning, and strain ΔE = 31.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 579.3 · logP 6.35 · TPSA 77.8
37.3 0.48 2.0763 -0.7662 4 31.27 579.3 6.35 77.8 2.749 0.07 0.81 0 0 0.22
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 31.3
T16
T16
184 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC235
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; high strain Δ 46.3, geometry warning, and strain ΔE = 46.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 385.5 · logP 2.38 · TPSA 83.8
42.6 0.40 3.5662 -0.9636 1 46.26 385.5 2.38 83.8 2.905 0.58 0.64 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; high strain Δ 46.3
T16
T16
185 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_232
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 20 clashes; 8 protein contact clashes; high strain Δ 37.9, geometry warning, and strain ΔE = 37.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 531.8 · logP 0.74 · TPSA 35.7
35.8 0.36 2.8473 -0.5965 9 37.94 531.8 0.74 35.7 5.556 0.70 0.70 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 20 clashes; 8 protein contact clashes; high strain Δ 37.9
T16
T16
186 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_151
50% of hydrophobic surface appears solvent-exposed (12/24 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 430.4 · logP 3.96 · TPSA 33.5
37.4 0.43 3.1002 -0.8679 12 12.34 430.4 3.96 33.5 5.042 0.65 0.59 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T16
T16
187 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC2_88
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 28.6, geometry warning, and strain ΔE = 28.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 489.7 · logP 4.72 · TPSA 67.6
35.4 0.38 3.4536 -0.7045 4 28.57 489.7 4.72 67.6 4.789 0.28 0.62 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 28.6
T16
T16
188 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0950
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 3 protein clashes; high strain Δ 55.7, geometry warning, and strain ΔE = 55.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 448.5 · logP 2.29 · TPSA 158.3
37.5 0.22 4.8425 -0.7789 1 55.65 448.5 2.29 158.3 2.828 0.45 0.80 0 0 0.23
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 3 protein clashes; high strain Δ 55.7
T16
T16
189 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56795021
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 4 protein clashes; moderate strain Δ 26.5, geometry warning, and strain ΔE = 26.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 333.4 · logP 3.25 · TPSA 85.3
33.5 0.18 5.3821 -0.9071 5 26.50 333.4 3.25 85.3 3.864 0.58 0.46 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 4 protein clashes; moderate strain Δ 26.5
T16
T16
190 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0624
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 3 protein clashes; high strain Δ 34.2, geometry warning, and strain ΔE = 34.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 395.5 · logP 2.16 · TPSA 144.0
37.1 0.25 4.6048 -0.8721 0 34.18 395.5 2.16 144.0 2.694 0.42 0.65 0 0 0.45
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 10 clashes; 3 protein clashes; high strain Δ 34.2
T16
T16
191 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_ACDS_38
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes, geometry warning, and strain ΔE = 20.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 530.3 · logP 6.13 · TPSA 48.2
35.9 0.44 2.9645 -0.8995 4 19.97 530.3 6.13 48.2 3.308 0.07 0.74 0 0 0.24
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T16
T16
192 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_ACDS_32
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 489.3 · logP 6.55 · TPSA 43.6
35.2 0.42 2.8099 -0.8558 7 18.02 489.3 6.55 43.6 2.643 0.14 0.77 0 0 0.28
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T16
T16
193 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_170
52% of hydrophobic surface appears solvent-exposed (13/25 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 361.6 · logP 3.52 · TPSA 16.5
36.8 0.42 3.1917 -0.8684 13 13.59 361.6 3.52 16.5 4.938 0.65 0.63 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes
T16
T16
194 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_237
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash; high strain Δ 30.4, geometry warning, and strain ΔE = 30.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 445.7 · logP 2.77 · TPSA 20.9
39.5 0.43 2.7541 -0.7246 5 30.45 445.7 2.77 20.9 5.901 0.62 0.56 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash; high strain Δ 30.4
T16
T16
195 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OSA_Lib_280
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 3 protein clashes; moderate strain Δ 27.8, geometry warning, and strain ΔE = 27.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 433.7 · logP 2.67 · TPSA 24.3
34.6 0.28 4.7659 -0.8828 4 27.80 433.7 2.67 24.3 5.586 0.62 0.42 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 3 protein clashes; moderate strain Δ 27.8
T16
T16
196 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC225
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 27.2, geometry warning, and strain ΔE = 27.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 419.0 · logP 2.52 · TPSA 77.8
38.6 0.50 2.6269 -0.9165 9 27.20 419.0 2.52 77.8 3.011 0.55 0.46 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 27.2
T16
T16
197 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_78
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 2 protein clashes; moderate strain Δ 25.6, geometry warning, and strain ΔE = 25.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 457.6 · logP 2.31 · TPSA 96.0
40.0 0.33 3.5811 -0.7292 5 25.57 457.6 2.31 96.0 3.171 0.58 0.63 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 2 protein clashes; moderate strain Δ 25.6
T16
T16
198 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_61
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: 3 protein clashes; high strain Δ 45.2 and strain ΔE = 45.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 773.1 · logP 7.32 · TPSA 188.1
37.6 0.31 3.5072 -0.4761 4 45.19 773.1 7.32 188.1 5.235 0.20 0.64 0 0 0.12
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
3 protein clashes; high strain Δ 45.2
T16
T16
199 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56958950
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; high strain Δ 42.5, geometry warning, and strain ΔE = 42.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 543.6 · logP 2.44 · TPSA 113.1
37.3 0.43 2.3763 -0.6305 6 42.48 543.6 2.44 113.1 3.102 0.52 0.65 0 0 0.45
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 9 clashes; 1 protein clash; high strain Δ 42.5
T16
T16
200 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0957
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 27.7, geometry warning, and strain ΔE = 27.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 417.5 · logP 2.31 · TPSA 145.0
41.3 0.39 3.5982 -0.9224 1 27.65 417.5 2.31 145.0 3.134 0.39 0.80 0 0 0.23
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 27.7
Score composition ▼ show
Docking 28% · final rank, interaction-normalized score, raw docking score
Burial 18% · absolute exposed hydrophobic atom count (lower is better)
Strain 14% · strain delta, intra score, geometry sanity
Safety / ADMET 18% · ADMET score with hERG/AMES/DILI/bioaccumulation penalties — Pareto objective
Ecotoxicology 9% · fish/daphnia/algae LC50 classes + bioaccumulation + persistence — Pareto objective
Synthesis 10% · SA score when available, otherwise Fsp3 proxy
Native similarity 12% · contact and H-bond recall when a native reference exists
Diversity shortlist 0% · cached shortlist already includes the novelty-aware selection step

How ranking works: Pareto fronts are built from six default objectives — docking score, ligand efficiency, burial depth, strain energy, ADMET safety, and ecotoxicology (fish/daphnia/algae LC₅₀ + bioaccumulation + persistence). Front 1 contains non-dominated ligands: no other ligand beats them across all six objectives simultaneously. Inside each front, ligands are ordered by a compromise score with explicit penalties for PAINS, reactivity, toxicity alerts, geometry warnings, excluded poses, and artifact annotations. The top 200 are returned using a diversity-aware selection step.

Methodology ▼ show
1. Candidate definition. For each target we keep one best pose per ligand, so the shortlist is not inflated by many similar poses of the same compound.
2. Objective set. Each ligand is evaluated across docking quality, absolute nonpolar solvent exposure (`n_exposed`), conformational strain, native-like interaction similarity when a native reference exists, safety and ecotoxicology, synthesizability, and general developability indicators such as QED.
2a. SASA / burial source. `SASA: done` = cached FreeSASA metrics. `queued/running` = background worker scheduled. `failed` = worker failed. `missing` = no SASA cached yet.
3. Liability penalties. PAINS motifs, reactive groups, toxicity alerts, artifact annotations, geometry warnings, and excluded-pose flags reduce the compromise score and are shown explicitly.
4. Pareto ranking. Front 1 = non-dominated ligands (no other ligand is better in all objectives simultaneously). Lower front number = more balanced profile.
5. Missing SASA handling. Missing SASA lowers `Data completeness` to `Provisional` but does not automatically reject a ligand. Binding and geometry axes stay independent.
6. Compromise score. `100 × clamp(weighted positive − liability penalty − missing-data penalty)`. Weights: docking 28%, burial 18%, strain 14%, safety/ecotox 18%, synthesis 10%, native similarity 12% (when reference exists).
7. Component details. Docking = `final_rank_score` 55% + `score_inter_norm` 30% + raw `score` 15%. Strain = `strain_delta` 55% + `score_intra_norm` 30% + geometry sanity 15%.
8. Final shortlist. Top 50 per target taken front-by-front with diversity-aware selection — near-duplicate analogs do not dominate.
How to read the table. `Pareto` = non-dominated layer, `Compromise` = within-front ordering score, `n_exposed` = burial proxy (lower is better), `Strain dE` = conformational stress, colored dots = quick green/orange/red cue.
How to use selections. Mark compounds row-by-row, save to `Current`/`Temp`/`A/B/C` sets, export to SDF/XLSX/CSV, or send to downstream analysis pages.