FAIRMol

Ligand prioritization

Interactive top-50 shortlist per target built from a transparent multi-objective workflow. It combines docking quality, absolute exposed hydrophobic atoms, low strain, safety/ecotox, synthesizability, and native-contact similarity when a native reference exists, then uses Pareto fronts plus a compromise score to expose the most balanced ligands.

DB fairmol
200 shortlisted rows 1 targets
L. infantum SIR2 · T11
L. infantum
Protein: Sirtuin 2 (NAD-dependent deacetylase)
Targets
1
each capped at 50 ligands
Best-pose candidates
652
one best pose per ligand per target
Synth metric
SA score
direct SA metric
Absolute burial proxy
n_exposed
absolute exposed hydrophobic atoms, not fraction
Pareto front 1
6
non-dominated ligands across all selected targets
Burial source
FreeSASA 200
Proxy 0 · Missing 0
Metrics coverage
Done 200
Pending 0 · Failed 0 · Missing 0
Diversity shortlist
Novelty 0.45
High novelty 200 · Close analogs 0
New vs legacy top 50
Added 3 · Dropped 3
Stayed 197 of 200 legacy picks
T11
Native Front 1: 6
200 / 652 shortlisted
Best: ulfkktlib_3143 · score 66.3
Pareto layers observed: 11
Metrics: done 200 · pending 0 · failed 0 · missing 0
Diversity: novelty 0.45 · close analogs 0
New vs legacy: added 3 · dropped 3 · stayed 197/200
Added: Z2752015126, Z87656593, Z57695216 · Dropped: MK151, MK215, NMT-TY0433
Table view
Switch between a compact decision view, medicinal chemistry properties, and the full docking inspection layout.
Target 2D Rank Pareto Assessment Ligand Compromise Docking Final rank Inter norm n_exposed Strain dE MW cLogP TPSA SA score Safety Native sim PAINS Reactive QED SASA Flags
T11
T11
1 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_3143
strong docking, well-buried hydrophobics
Details
Why selected: Strong docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 1 protein clash.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 218.3 · logP -2.71 · TPSA 53.3
66.3 0.90 0.2579 -1.9420 1 8.14 218.3 -2.71 53.3 4.786 0.67 0.54 0 0 0.23
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, geometry warning; 4 clashes; 1 protein clash
T11
T11
2 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z277559108
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: 3 protein clashes and strain ΔE = 18.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 222.3 · logP -0.86 · TPSA 115.0
65.2 0.66 2.4338 -1.8157 1 18.92 222.3 -0.86 115.0 2.461 0.73 0.66 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
3 protein clashes
T11
T11
3 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z2670801365
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 189.3 · logP 2.87 · TPSA 26.0
60.4 0.72 1.8258 -1.8332 1 3.32 189.3 2.87 26.0 1.839 0.76 0.52 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 2 protein clashes
T11
T11
4 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44305789
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 4 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 237.3 · logP 2.88 · TPSA 49.3
58.7 0.74 0.4170 -1.3184 0 11.26 237.3 2.88 49.3 1.948 0.76 0.33 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 4 protein contact clashes
T11
T11
5 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57170671
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 262.3 · logP 1.95 · TPSA 72.2
58.5 0.55 2.6818 -1.3854 0 7.05 262.3 1.95 72.2 1.533 0.76 0.72 0 0 0.88
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes
T11
T11
6 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC89
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash and strain ΔE = 19.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 429.6 · logP 3.56 · TPSA 91.4
53.0 0.50 1.8406 -0.7677 6 19.85 429.6 3.56 91.4 4.540 0.70 0.52 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 8 clashes; 1 protein clash
T11
T11
7 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z275022726
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 2 clashes; 3 protein clashes.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 333.4 · logP 2.74 · TPSA 94.5
59.3 0.50 2.5970 -1.1137 1 17.01 333.4 2.74 94.5 2.955 0.62 0.72 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 2 clashes; 3 protein clashes
T11
T11
8 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_239
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 178.2 · logP 0.30 · TPSA 55.1
58.2 0.70 2.0832 -1.8327 3 13.27 178.2 0.30 55.1 2.067 0.76 0.62 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes
T11
T11
9 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1037335854
well-buried hydrophobics, clean safety profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.1 · logP 2.43 · TPSA 59.3
54.5 0.59 2.5739 -1.5193 0 16.75 281.1 2.43 59.3 3.685 0.76 0.58 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T11
T11
10 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z226217786
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 5 protein contact clashes; moderate strain Δ 22.4, geometry warning, and strain ΔE = 22.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 380.4 · logP 0.43 · TPSA 101.5
54.7 0.61 1.1142 -0.9426 2 22.36 380.4 0.43 101.5 3.146 0.70 0.76 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 5 protein contact clashes; moderate strain Δ 22.4
T11
T11
11 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z85934155
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 20.1, geometry warning, and strain ΔE = 20.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 271.1 · logP 2.08 · TPSA 59.6
54.5 0.60 2.5566 -1.6920 0 20.08 271.1 2.08 59.6 2.464 0.76 0.58 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 20.1
T11
T11
12 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z104497306
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 265.3 · logP 0.45 · TPSA 124.0
56.8 0.58 2.4434 -1.4244 0 7.99 265.3 0.45 124.0 2.092 0.70 0.68 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T11
T11
13 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_83
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 3 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 325.4 · logP 0.72 · TPSA 103.1
53.5 0.71 0.0689 -1.0285 2 14.63 325.4 0.72 103.1 3.918 0.66 0.50 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein contact clashes
T11
T11
14 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC249
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 297.3 · logP 1.72 · TPSA 83.0
53.8 0.57 1.6582 -1.0810 1 13.18 297.3 1.72 83.0 2.860 0.73 0.58 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash
T11
T11
15 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z25724937
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 2 clashes; 2 protein clashes; high strain Δ 30.2 and strain ΔE = 30.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 364.4 · logP 0.99 · TPSA 121.6
54.4 0.45 2.8177 -0.9571 6 30.24 364.4 0.99 121.6 2.928 0.70 0.71 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 2 clashes; 2 protein clashes; high strain Δ 30.2
T11
T11
16 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_101
well-buried hydrophobics, native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 1 protein clash; moderate strain Δ 20.5, geometry warning, and strain ΔE = 20.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 341.5 · logP 2.23 · TPSA 70.9
52.5 0.61 1.4294 -1.0567 0 20.48 341.5 2.23 70.9 4.781 0.62 0.68 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 1 protein clash; moderate strain Δ 20.5
T11
T11
17 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z147200608
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 7 protein contact clashes; moderate strain Δ 23.0, geometry warning, and strain ΔE = 23.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 301.3 · logP 1.30 · TPSA 113.8
53.1 0.66 0.5972 -1.1476 2 23.02 301.3 1.30 113.8 2.474 0.70 0.53 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 7 protein contact clashes; moderate strain Δ 23.0
T11
T11
18 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27682747
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 296.4 · logP 1.58 · TPSA 89.3
55.4 0.56 2.2312 -1.2825 1 8.69 296.4 1.58 89.3 1.830 0.73 0.62 0 0 0.90
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 2 protein clashes
T11
T11
19 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z2235487241
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 4 protein contact clashes; high strain Δ 31.5, geometry warning, and strain ΔE = 31.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 317.8 · logP 3.81 · TPSA 69.6
52.4 0.65 0.6057 -1.1100 1 31.52 317.8 3.81 69.6 2.241 0.65 0.57 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 4 protein contact clashes; high strain Δ 31.5
T11
T11
20 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45614013
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 312.4 · logP 1.13 · TPSA 106.3
56.8 0.52 2.8872 -1.3320 0 11.94 312.4 1.13 106.3 1.643 0.73 0.74 0 0 0.88
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes
T11
T11
21 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57183373
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 286.2 · logP 2.28 · TPSA 111.1
51.8 0.42 3.4604 -1.1515 0 8.34 286.2 2.28 111.1 2.375 0.66 0.69 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes
T11
T11
22 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z237576524
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 4 protein contact clashes; moderate strain Δ 23.4, geometry warning, and strain ΔE = 23.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 325.4 · logP 3.64 · TPSA 49.2
51.2 0.67 0.6452 -1.0882 0 23.39 325.4 3.64 49.2 2.771 0.62 0.33 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 4 protein contact clashes; moderate strain Δ 23.4
T11
T11
23 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_901
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.4 · logP 0.52 · TPSA 87.3
49.9 0.62 1.6448 -1.2357 3 7.61 321.4 0.52 87.3 2.540 0.67 0.41 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 4 clashes; 1 protein clash
T11
T11
24 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57300837
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 5 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 386.9 · logP 4.27 · TPSA 66.5
47.5 0.59 1.0384 -0.9129 2 11.21 386.9 4.27 66.5 2.166 0.43 0.40 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 5 protein contact clashes
T11
T11
25 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z966775152
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 254.2 · logP 2.41 · TPSA 86.5
53.9 0.49 3.0873 -1.3254 0 12.77 254.2 2.41 86.5 2.109 0.70 0.70 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T11
T11
26 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45956756
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 263.3 · logP 3.82 · TPSA 53.4
54.1 0.54 2.0658 -1.2244 1 10.41 263.3 3.82 53.4 2.238 0.73 0.66 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T11
T11
27 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC345
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 222.2 · logP -0.19 · TPSA 107.0
54.0 0.58 2.5392 -1.5150 0 16.98 222.2 -0.19 107.0 3.167 0.73 0.62 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 2 protein clashes
T11
T11
28 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_164
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein contact clashes; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 337.4 · logP 2.44 · TPSA 106.8
52.5 0.66 0.5290 -1.0613 0 22.86 337.4 2.44 106.8 2.764 0.58 0.53 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein contact clashes; moderate strain Δ 22.9
T11
T11
29 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z48961169
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 7 protein contact clashes; moderate strain Δ 23.3, geometry warning, and strain ΔE = 23.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 402.5 · logP 3.23 · TPSA 74.1
51.4 0.61 1.1780 -1.0252 2 23.32 402.5 3.23 74.1 2.868 0.62 0.65 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 7 protein contact clashes; moderate strain Δ 23.3
T11
T11
30 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC232
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein contact clashes; high strain Δ 42.0, geometry warning, and strain ΔE = 42.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.5 · logP 1.49 · TPSA 87.0
50.3 0.58 0.9457 -0.8686 2 42.01 400.5 1.49 87.0 3.022 0.66 0.70 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 3 protein contact clashes; high strain Δ 42.0
T11
T11
31 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z133716394
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 374.9 · logP 1.81 · TPSA 97.5
52.8 0.49 2.9290 -1.1861 2 12.08 374.9 1.81 97.5 1.870 0.73 0.62 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T11
T11
32 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z2755722093
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes; high strain Δ 32.5, geometry warning, and strain ΔE = 32.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 254.3 · logP 1.80 · TPSA 76.2
51.9 0.58 3.1917 -1.7407 3 32.45 254.3 1.80 76.2 2.598 0.73 0.70 0 0 0.81
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; high strain Δ 32.5
T11
T11
33 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56757587
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 318.1 · logP 4.52 · TPSA 61.6
50.6 0.49 3.1547 -1.3374 0 17.12 318.1 4.52 61.6 2.376 0.65 0.52 0 0 0.84
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T11
T11
34 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56917368
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 285.2 · logP 2.01 · TPSA 59.6
53.7 0.56 3.1470 -1.6325 2 18.85 285.2 2.01 59.6 2.425 0.76 0.62 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes
T11
T11
35 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z55981969
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 250.3 · logP 1.17 · TPSA 78.1
52.0 0.45 3.8941 -1.4612 0 13.33 250.3 1.17 78.1 3.190 0.73 0.66 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
T11
T11
36 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_82
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 324.4 · logP 3.33 · TPSA 64.3
49.7 0.46 2.5451 -1.0309 1 10.53 324.4 3.33 64.3 2.416 0.65 0.58 0 0 0.94
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T11
T11
37 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27749611
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 301.4 · logP 4.21 · TPSA 29.1
51.4 0.46 2.7846 -1.0594 2 8.60 301.4 4.21 29.1 1.441 0.62 0.67 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
T11
T11
38 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_38
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein contact clashes; moderate strain Δ 26.3, geometry warning, and strain ΔE = 26.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 340.8 · logP 4.00 · TPSA 50.2
49.3 0.62 0.7502 -1.0078 1 26.28 340.8 4.00 50.2 3.575 0.62 0.48 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 3 protein contact clashes; moderate strain Δ 26.3
T11
T11
39 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z53223394
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 312.4 · logP 0.32 · TPSA 118.0
53.1 0.54 2.4465 -1.2718 1 14.72 312.4 0.32 118.0 2.865 0.73 0.62 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 2 protein clashes
T11
T11
40 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_466
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 319.4 · logP 2.43 · TPSA 46.0
48.8 0.44 2.7280 -0.9869 0 8.28 319.4 2.43 46.0 4.228 0.62 0.65 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T11
T11
41 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45614029
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 330.4 · logP 1.27 · TPSA 106.3
55.7 0.51 2.8930 -1.2833 0 17.80 330.4 1.27 106.3 1.716 0.73 0.74 0 0 0.88
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes
T11
T11
42 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_38
well-buried hydrophobics, native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 5 protein contact clashes, geometry warning, and strain ΔE = 19.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 432.6 · logP 3.36 · TPSA 75.1
48.9 0.56 1.3601 -0.8489 3 19.44 432.6 3.36 75.1 3.906 0.58 0.68 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 5 protein contact clashes
T11
T11
43 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC323
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 291.4 · logP 1.06 · TPSA 85.1
51.3 0.51 2.8620 -1.3262 3 9.86 291.4 1.06 85.1 1.854 0.70 0.58 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes
T11
T11
44 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30217191
native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 4 protein contact clashes; moderate strain Δ 29.0, geometry warning, and strain ΔE = 29.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 407.5 · logP 0.92 · TPSA 94.8
47.8 0.62 0.5259 -0.8803 8 28.99 407.5 0.92 94.8 3.771 0.70 0.68 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 4 protein contact clashes; moderate strain Δ 29.0
T11
T11
45 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z334929348
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.2 · logP 2.96 · TPSA 92.4
51.5 0.46 3.7745 -1.3797 1 9.79 347.2 2.96 92.4 2.063 0.62 0.69 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T11
T11
46 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC2_34
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 29.9, geometry warning, and strain ΔE = 29.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 422.0 · logP 1.42 · TPSA 58.0
48.4 0.44 2.7241 -0.8970 1 29.92 422.0 1.42 58.0 3.157 0.76 0.54 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 29.9
T11
T11
47 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z116814534
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 2.53 · TPSA 86.4
47.4 0.46 2.3468 -0.8241 2 11.22 410.5 2.53 86.4 2.119 0.58 0.46 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T11
T11
48 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30538241
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 28.0, geometry warning, and strain ΔE = 28.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 442.3 · logP 3.85 · TPSA 91.4
48.5 0.57 1.9544 -1.0244 4 28.00 442.3 3.85 91.4 2.701 0.58 0.60 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 28.0
T11
T11
49 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z31518712
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 45.7, geometry warning, and strain ΔE = 45.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 267.3 · logP 2.82 · TPSA 67.0
49.4 0.58 1.3124 -1.1830 2 45.67 267.3 2.82 67.0 2.002 0.73 0.58 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 45.7
T11
T11
50 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z73416904
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 442.5 · logP 0.80 · TPSA 121.5
52.1 0.51 2.1591 -0.9014 2 18.53 442.5 0.80 121.5 2.271 0.63 0.75 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T11
T11
51 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_186
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 472.2 · logP 4.10 · TPSA 69.8
45.7 0.61 1.5069 -1.1561 3 17.57 472.2 4.10 69.8 2.741 0.25 0.68 0 0 0.45
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash
T11
T11
52 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19654250
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 20.2, geometry warning, and strain ΔE = 20.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.5 · logP 3.79 · TPSA 54.9
49.1 0.64 1.3724 -1.2880 3 20.17 321.5 3.79 54.9 2.096 0.62 0.33 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 20.2
T11
T11
53 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z608333022
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 7 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 375.4 · logP 4.73 · TPSA 79.5
47.8 0.53 1.6511 -0.8811 3 13.78 375.4 4.73 79.5 1.747 0.40 0.69 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 7 protein contact clashes
T11
T11
54 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_324
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 412.4 · logP 6.27 · TPSA 51.9
46.1 0.58 1.3033 -0.9567 3 10.38 412.4 6.27 51.9 2.850 0.28 0.66 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 1 protein clash
T11
T11
55 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC394
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 8 protein contact clashes, geometry warning, and strain ΔE = 19.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.5 · logP 4.30 · TPSA 108.8
44.5 0.59 1.5252 -1.0146 6 19.30 428.5 4.30 108.8 3.809 0.48 0.60 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 8 protein contact clashes
T11
T11
56 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1621
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 374.4 · logP 2.87 · TPSA 67.2
44.4 0.60 0.7756 -0.8482 12 10.45 374.4 2.87 67.2 2.672 0.62 0.52 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein contact clashes
T11
T11
57 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57176222
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 302.2 · logP 1.99 · TPSA 131.4
50.3 0.42 3.7510 -1.2181 0 9.81 302.2 1.99 131.4 2.545 0.63 0.66 0 0 0.43
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 3 protein clashes
T11
T11
58 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_403
Hydrophobic burial looks adequate: 27% exposed (8/30 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 25.9 and strain ΔE = 25.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 468.7 · logP 6.09 · TPSA 66.8
41.3 0.35 3.4013 -0.7424 8 25.91 468.7 6.09 66.8 5.436 0.40 0.60 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 25.9
T11
T11
59 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_402
80% of hydrophobic surface is solvent-exposed (24/30 atoms). Large non-polar area without protein contacts incurs a desolvation penalty and will reduce binding affinity. Consider truncating or replacing the exposed fragment.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 24.7 and strain ΔE = 24.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 468.7 · logP 6.09 · TPSA 66.8
27.6 0.34 3.5444 -0.7437 24 24.67 468.7 6.09 66.8 5.417 0.40 0.48 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 24.7
T11
T11
60 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_3273
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 2 protein clashes; high strain Δ 66.9 and strain ΔE = 66.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 265.3 · logP -0.81 · TPSA 91.2
52.6 0.54 2.6294 -1.3131 0 66.88 265.3 -0.81 91.2 5.236 0.70 0.55 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 5 clashes; 2 protein clashes; high strain Δ 66.9
T11
T11
61 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56785135
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 2 protein clashes; moderate strain Δ 23.1, geometry warning, and strain ΔE = 23.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 272.3 · logP 2.25 · TPSA 73.1
52.4 0.53 2.3505 -1.2150 2 23.09 272.3 2.25 73.1 2.628 0.76 0.65 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 2 protein clashes; moderate strain Δ 23.1
T11
T11
62 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49719002
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 42.0, geometry warning, and strain ΔE = 42.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 280.7 · logP 1.69 · TPSA 110.9
50.5 0.53 2.8863 -1.4123 0 41.96 280.7 1.69 110.9 2.708 0.70 0.65 0 0 0.39
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 42.0
T11
T11
63 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z803081352
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 2 protein clashes; moderate strain Δ 25.2, geometry warning, and strain ΔE = 25.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 234.3 · logP -0.48 · TPSA 93.0
50.6 0.57 2.0981 -1.3894 1 25.23 234.3 -0.48 93.0 3.348 0.73 0.56 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 2 protein clashes; moderate strain Δ 25.2
T11
T11
64 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1508915075
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 22.2, geometry warning, and strain ΔE = 22.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 211.2 · logP 0.44 · TPSA 103.8
51.3 0.54 3.1537 -1.5962 3 22.17 211.2 0.44 103.8 2.749 0.70 0.68 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 22.2
T11
T11
65 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_23
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 334.4 · logP 2.99 · TPSA 70.7
50.6 0.53 1.6938 -0.9862 3 15.86 334.4 2.99 70.7 2.479 0.65 0.64 0 0 0.88
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash
T11
T11
66 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z16042309
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 20.2, geometry warning, and strain ΔE = 20.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.9 · logP 3.86 · TPSA 61.1
49.5 0.50 2.7923 -1.1839 0 20.23 355.9 3.86 61.1 2.544 0.62 0.57 0 0 0.45
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 20.2
T11
T11
67 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK65
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 1 protein clash; moderate strain Δ 20.5, geometry warning, and strain ΔE = 20.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 338.5 · logP 4.01 · TPSA 79.4
50.3 0.58 1.5334 -1.0952 5 20.53 338.5 4.01 79.4 3.189 0.70 0.69 0 0 0.47
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 1 protein clash; moderate strain Δ 20.5
T11
T11
68 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_172
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 6 protein contact clashes; moderate strain Δ 28.3, geometry warning, and strain ΔE = 28.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 476.6 · logP 1.81 · TPSA 79.7
49.9 0.53 1.3626 -0.7800 1 28.29 476.6 1.81 79.7 3.890 0.70 0.63 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 6 protein contact clashes; moderate strain Δ 28.3
T11
T11
69 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_128
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 21.1, geometry warning, and strain ΔE = 21.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 299.4 · logP 2.93 · TPSA 86.0
49.6 0.47 3.2282 -1.2673 1 21.05 299.4 2.93 86.0 2.344 0.70 0.55 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 21.1
T11
T11
70 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TbNat_134
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 286.2 · logP 1.09 · TPSA 108.0
50.9 0.40 3.8838 -1.2417 0 11.13 286.2 1.09 108.0 3.205 0.73 0.69 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T11
T11
71 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49596635
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 11 protein contact clashes; moderate strain Δ 21.6, geometry warning, and strain ΔE = 21.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 403.5 · logP 1.57 · TPSA 108.3
50.1 0.45 2.1071 -0.8463 0 21.65 403.5 1.57 108.3 2.216 0.70 0.61 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 11 protein contact clashes; moderate strain Δ 21.6
T11
T11
72 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44868759
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.2 · logP 2.90 · TPSA 76.5
48.9 0.43 3.6341 -1.2121 0 18.47 331.2 2.90 76.5 2.857 0.58 0.66 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T11
T11
73 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_626
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 21.9, geometry warning, and strain ΔE = 21.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 343.5 · logP 1.71 · TPSA 110.9
51.7 0.48 2.7827 -1.1962 1 21.87 343.5 1.71 110.9 2.415 0.73 0.68 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 21.9
T11
T11
74 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56811143
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 423.9 · logP 3.53 · TPSA 75.3
49.8 0.49 2.4745 -0.9789 0 19.52 423.9 3.53 75.3 2.288 0.55 0.63 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T11
T11
75 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC325
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.4 · logP 0.65 · TPSA 86.0
49.8 0.53 2.0996 -1.1388 2 11.32 321.4 0.65 86.0 2.740 0.70 0.47 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes
T11
T11
76 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z18509545
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 4 protein contact clashes; moderate strain Δ 28.9, geometry warning, and strain ΔE = 28.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 2.78 · TPSA 84.9
47.5 0.56 1.1076 -0.8208 4 28.87 410.5 2.78 84.9 2.948 0.55 0.66 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 4 protein contact clashes; moderate strain Δ 28.9
T11
T11
77 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27682886
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 308.3 · logP 1.65 · TPSA 89.3
51.6 0.41 3.4616 -1.1636 1 15.81 308.3 1.65 89.3 1.626 0.73 0.72 0 0 0.90
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes
T11
T11
78 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z235511374
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; high strain Δ 40.3, geometry warning, and strain ΔE = 40.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.4 · logP 3.44 · TPSA 75.1
47.7 0.59 1.3649 -1.1500 2 40.25 331.4 3.44 75.1 2.294 0.58 0.55 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; high strain Δ 40.3
T11
T11
79 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z116484872
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 307.4 · logP 3.02 · TPSA 67.0
48.4 0.49 2.5337 -1.0654 5 13.98 307.4 3.02 67.0 1.794 0.62 0.64 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes
T11
T11
80 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z88883573
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 316.4 · logP 2.68 · TPSA 75.3
47.7 0.50 2.4119 -1.1106 1 19.08 316.4 2.68 75.3 1.984 0.62 0.37 0 0 0.91
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T11
T11
81 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z237462396
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 316.3 · logP 2.46 · TPSA 85.6
46.3 0.34 3.7691 -0.9963 1 10.49 316.3 2.46 85.6 2.090 0.58 0.61 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T11
T11
82 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1303983567
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.4 · logP 2.72 · TPSA 52.7
45.2 0.47 2.3884 -0.9708 2 8.31 347.4 2.72 52.7 2.700 0.65 0.24 0 0 0.92
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T11
T11
83 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_217
well-buried hydrophobics
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.3, geometry warning, and strain ΔE = 25.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 309.4 · logP 1.57 · TPSA 95.2
45.6 0.46 2.6388 -1.0465 0 25.25 309.4 1.57 95.2 3.537 0.70 0.35 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.3
T11
T11
84 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC275
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 299.3 · logP 2.74 · TPSA 71.2
45.4 0.54 1.5893 -1.0732 8 14.40 299.3 2.74 71.2 2.156 0.73 0.40 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash
T11
T11
85 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19456393
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 8 protein contact clashes; moderate strain Δ 25.9, geometry warning, and strain ΔE = 25.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 427.5 · logP 4.13 · TPSA 79.0
44.4 0.56 1.2367 -0.8748 3 25.89 427.5 4.13 79.0 3.209 0.36 0.65 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 8 protein contact clashes; moderate strain Δ 25.9
T11
T11
86 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30857987
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.8 · logP 1.89 · TPSA 89.3
48.6 0.47 2.7158 -1.1031 4 9.77 352.8 1.89 89.3 1.746 0.70 0.51 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T11
T11
87 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56175984
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 15 clashes; 5 protein contact clashes; moderate strain Δ 28.4, geometry warning, and strain ΔE = 28.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.3 · logP 5.20 · TPSA 71.2
44.1 0.55 1.5973 -0.9638 2 28.41 410.3 5.20 71.2 2.912 0.28 0.68 0 0 0.48
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 15 clashes; 5 protein contact clashes; moderate strain Δ 28.4
T11
T11
88 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TbNat_133
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.3 · logP 2.08 · TPSA 106.2
46.6 0.40 3.1419 -0.9634 3 12.50 344.3 2.08 106.2 4.172 0.73 0.61 0 0 0.82
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T11
T11
89 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29514151
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 456.5 · logP 2.59 · TPSA 89.3
44.3 0.36 3.1900 -0.7689 3 13.15 456.5 2.59 89.3 2.417 0.55 0.60 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T11
T11
90 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z275022626
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 24.7, geometry warning, and strain ΔE = 24.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.5 · logP 4.85 · TPSA 67.8
46.5 0.54 1.9722 -1.0811 2 24.70 398.5 4.85 67.8 2.118 0.43 0.65 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 24.7
T11
T11
91 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45612906
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.5 · logP 5.38 · TPSA 59.1
44.6 0.45 2.4773 -0.9057 1 16.31 394.5 5.38 59.1 1.934 0.32 0.66 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T11
T11
92 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45925616
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 406.9 · logP 5.83 · TPSA 62.2
43.4 0.40 3.1563 -0.9148 2 11.11 406.9 5.83 62.2 2.301 0.28 0.74 0 0 0.42
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T11
T11
93 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44349751
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 361.8 · logP 2.53 · TPSA 113.0
43.4 0.27 4.6642 -1.0077 3 11.65 361.8 2.53 113.0 2.083 0.62 0.61 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T11
T11
94 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57300846
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 5 protein contact clashes; high strain Δ 30.4, geometry warning, and strain ΔE = 30.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 3.58 · TPSA 95.6
47.6 0.56 1.2697 -0.9161 4 30.38 409.5 3.58 95.6 2.189 0.58 0.63 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 5 protein contact clashes; high strain Δ 30.4
T11
T11
95 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29466466
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 422.5 · logP 2.97 · TPSA 93.7
41.3 0.39 3.0349 -0.7999 9 15.78 422.5 2.97 93.7 2.846 0.55 0.67 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T11
T11
96 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK217
well-buried hydrophobics
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 8 protein contact clashes; moderate strain Δ 20.7, geometry warning, and strain ΔE = 20.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 426.5 · logP 4.61 · TPSA 95.7
44.4 0.56 1.6344 -0.9517 5 20.67 426.5 4.61 95.7 3.566 0.48 0.60 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 8 protein contact clashes; moderate strain Δ 20.7
T11
T11
97 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49597035
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 437.9 · logP 2.22 · TPSA 108.3
47.8 0.44 2.5622 -0.8632 1 18.98 437.9 2.22 108.3 2.302 0.58 0.61 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash
T11
T11
98 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Babesia_33
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 338.8 · logP 4.07 · TPSA 62.2
39.9 0.46 2.6603 -0.9914 13 13.21 338.8 4.07 62.2 2.359 0.62 0.52 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T11
T11
99 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_709
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 414.9 · logP 5.09 · TPSA 51.1
40.0 0.39 3.1160 -0.8377 6 10.10 414.9 5.09 51.1 2.060 0.32 0.63 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 17 clashes; 1 protein clash
T11
T11
100 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z55982019
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 22.3, geometry warning, and strain ΔE = 22.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 256.7 · logP 1.89 · TPSA 68.9
52.4 0.53 3.2087 -1.5736 3 22.34 256.7 1.89 68.9 2.283 0.76 0.70 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 22.3
T11
T11
101 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0775
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 28.2, geometry warning, and strain ΔE = 28.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 322.4 · logP 0.40 · TPSA 153.1
51.1 0.51 2.2908 -1.0948 1 28.19 322.4 0.40 153.1 2.221 0.60 0.78 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 28.2
T11
T11
102 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49725613
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 328.8 · logP 3.41 · TPSA 59.9
49.1 0.49 2.1484 -1.0306 3 17.01 328.8 3.41 59.9 2.323 0.65 0.64 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash
T11
T11
103 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44425700
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 295.3 · logP 2.21 · TPSA 77.2
48.3 0.40 3.2450 -1.0843 1 22.90 295.3 2.21 77.2 2.214 0.70 0.66 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 22.9
T11
T11
104 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TB2021_39
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 332.4 · logP 3.04 · TPSA 46.1
48.2 0.46 2.4540 -0.9782 1 18.18 332.4 3.04 46.1 3.155 0.62 0.65 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T11
T11
105 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_85
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; high strain Δ 46.5, geometry warning, and strain ΔE = 46.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 322.3 · logP 3.78 · TPSA 85.5
47.4 0.49 2.2655 -1.0292 0 46.54 322.3 3.78 85.5 2.506 0.58 0.68 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; high strain Δ 46.5
T11
T11
106 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45359950
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.6 · logP 2.62 · TPSA 74.8
48.8 0.49 2.2043 -0.9469 2 18.91 428.6 2.62 74.8 2.247 0.58 0.62 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash
T11
T11
107 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_2000
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 17 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 415.4 · logP 2.41 · TPSA 111.9
46.7 0.29 4.3685 -0.9077 1 17.91 415.4 2.41 111.9 2.512 0.66 0.72 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 17 clashes; 2 protein clashes
T11
T11
108 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_188
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 339.5 · logP 3.68 · TPSA 70.9
47.5 0.48 2.5688 -1.0785 5 13.56 339.5 3.68 70.9 3.125 0.62 0.72 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 2 protein clashes
T11
T11
109 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z275023258
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 29.0, geometry warning, and strain ΔE = 29.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 422.9 · logP 3.07 · TPSA 75.7
47.3 0.55 1.5294 -0.8826 7 29.02 422.9 3.07 75.7 2.812 0.62 0.71 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 29.0
T11
T11
110 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z14242918
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; high strain Δ 40.2, geometry warning, and strain ΔE = 40.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.4 · logP 1.61 · TPSA 126.1
46.5 0.48 2.1500 -0.8925 2 40.23 416.4 1.61 126.1 3.620 0.66 0.67 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; high strain Δ 40.2
T11
T11
111 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30000773
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 21.9, geometry warning, and strain ΔE = 21.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 429.3 · logP 3.20 · TPSA 75.7
48.7 0.49 2.0299 -0.8988 2 21.89 429.3 3.20 75.7 2.000 0.62 0.58 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 21.9
T11
T11
112 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z420888184
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 22.8, geometry warning, and strain ΔE = 22.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 346.4 · logP 1.94 · TPSA 89.7
47.1 0.34 4.0732 -1.0691 2 22.84 346.4 1.94 89.7 1.966 0.73 0.62 0 0 0.92
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 22.8
T11
T11
113 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30857856
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 324.4 · logP 1.30 · TPSA 89.3
51.2 0.52 2.7180 -1.3016 4 13.02 324.4 1.30 89.3 1.933 0.70 0.68 0 0 0.84
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 2 protein clashes
T11
T11
114 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC223
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 22.3, geometry warning, and strain ΔE = 22.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 406.0 · logP 0.72 · TPSA 79.0
48.7 0.51 1.7746 -0.8778 3 22.35 406.0 0.72 79.0 4.273 0.70 0.67 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 22.3
T11
T11
115 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z16042352
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; high strain Δ 31.5, geometry warning, and strain ΔE = 31.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 322.4 · logP 2.62 · TPSA 62.4
48.3 0.48 3.5835 -1.3706 0 31.52 322.4 2.62 62.4 3.448 0.62 0.68 0 0 0.46
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; high strain Δ 31.5
T11
T11
116 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56849599
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 26.2, geometry warning, and strain ΔE = 26.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.9 · logP 4.51 · TPSA 68.2
46.0 0.45 2.3559 -0.8764 0 26.24 416.9 4.51 68.2 2.280 0.43 0.66 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 26.2
T11
T11
117 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_52
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 329.4 · logP 3.72 · TPSA 90.7
45.4 0.39 3.1311 -0.9460 2 16.71 329.4 3.72 90.7 2.031 0.58 0.55 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T11
T11
118 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z123660746
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 360.4 · logP 1.69 · TPSA 95.7
46.6 0.29 4.3079 -0.9709 1 18.27 360.4 1.69 95.7 1.798 0.73 0.56 0 0 0.87
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes
T11
T11
119 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_89
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes; high strain Δ 33.1, geometry warning, and strain ΔE = 33.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 413.9 · logP 2.92 · TPSA 82.2
43.7 0.32 3.9788 -0.8860 0 33.13 413.9 2.92 82.2 2.656 0.55 0.66 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; high strain Δ 33.1
T11
T11
120 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK214
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 3.80 · TPSA 100.6
46.3 0.49 2.1698 -0.9045 5 16.37 409.5 3.80 100.6 3.606 0.66 0.61 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T11
T11
121 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z20253414
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 4 protein clashes, geometry warning, and strain ΔE = 18.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 371.4 · logP 2.19 · TPSA 102.1
43.5 0.33 3.9750 -0.9119 5 18.32 371.4 2.19 102.1 2.161 0.58 0.68 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 4 protein clashes
T11
T11
122 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC2_35
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 452.0 · logP -0.00 · TPSA 62.4
45.9 0.40 2.8078 -0.7871 1 27.02 452.0 -0.00 62.4 3.797 0.73 0.51 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; moderate strain Δ 27.0
T11
T11
123 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27783184
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 3.58 · TPSA 66.5
44.5 0.46 2.2856 -0.8284 7 16.80 410.5 3.58 66.5 2.417 0.62 0.56 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash
T11
T11
124 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_181
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 28.8, geometry warning, and strain ΔE = 28.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 367.4 · logP 1.58 · TPSA 128.2
45.2 0.33 3.6384 -0.9800 0 28.85 367.4 1.58 128.2 2.538 0.66 0.65 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 28.8
T11
T11
125 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1213669791
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 462.9 · logP 2.71 · TPSA 124.6
45.2 0.46 2.3758 -0.8011 5 18.81 462.9 2.71 124.6 2.367 0.52 0.62 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T11
T11
126 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49712358
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 277.3 · logP 3.78 · TPSA 57.5
43.1 0.30 4.6079 -1.1644 6 17.03 277.3 3.78 57.5 2.113 0.73 0.63 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 3 protein clashes
T11
T11
127 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_171
well-buried hydrophobics, native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 4 protein contact clashes; high strain Δ 40.5, geometry warning, and strain ΔE = 40.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 470.6 · logP 1.54 · TPSA 88.9
47.9 0.56 1.0395 -0.7771 4 40.52 470.6 1.54 88.9 3.745 0.70 0.68 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 4 protein contact clashes; high strain Δ 40.5
T11
T11
128 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30225126
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 47.9, geometry warning, and strain ΔE = 47.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 459.6 · logP 3.18 · TPSA 86.8
42.7 0.54 1.4368 -0.8503 2 47.87 459.6 3.18 86.8 2.701 0.44 0.56 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 47.9
T11
T11
129 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z13863770
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 42.2, geometry warning, and strain ΔE = 42.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 387.4 · logP 2.29 · TPSA 97.0
45.3 0.50 1.7668 -0.8471 1 42.18 387.4 2.29 97.0 2.857 0.62 0.47 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 42.2
T11
T11
130 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z20271426
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 401.5 · logP 4.26 · TPSA 72.2
40.2 0.47 2.3918 -0.9311 10 17.33 401.5 4.26 72.2 2.551 0.40 0.71 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T11
T11
131 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC324
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 4 protein clashes, geometry warning, and strain ΔE = 19.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 305.4 · logP 0.95 · TPSA 76.8
45.8 0.41 3.8267 -1.2864 2 19.42 305.4 0.95 76.8 2.783 0.70 0.50 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 4 protein clashes
T11
T11
132 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45612920
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 416.5 · logP 5.35 · TPSA 59.1
44.6 0.43 2.5898 -0.8757 0 17.25 416.5 5.35 59.1 2.081 0.32 0.66 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T11
T11
133 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1097085036
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 265.3 · logP 2.78 · TPSA 58.0
49.0 0.39 3.8168 -1.2449 1 18.48 265.3 2.78 58.0 2.362 0.73 0.66 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes
T11
T11
134 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57009636
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 21.3, geometry warning, and strain ΔE = 21.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 315.3 · logP 1.60 · TPSA 88.0
49.1 0.50 2.0787 -1.0390 3 21.28 315.3 1.60 88.0 2.587 0.73 0.58 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 21.3
T11
T11
135 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56833821
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 27.6, geometry warning, and strain ΔE = 27.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.5 · logP 2.55 · TPSA 106.5
47.0 0.51 2.0915 -0.9681 4 27.62 355.5 2.55 106.5 3.412 0.62 0.70 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 27.6
T11
T11
136 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44305068
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.8 · logP 3.74 · TPSA 102.4
47.1 0.46 2.7917 -1.0879 2 14.31 400.8 3.74 102.4 2.336 0.58 0.58 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash
T11
T11
137 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1434525715
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 21.4, geometry warning, and strain ΔE = 21.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 381.5 · logP 3.12 · TPSA 88.2
47.7 0.42 2.8570 -0.9124 2 21.40 381.5 3.12 88.2 1.831 0.58 0.66 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 21.4
T11
T11
138 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z166606608
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; high strain Δ 31.0, geometry warning, and strain ΔE = 31.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.3 · logP 2.14 · TPSA 84.6
45.8 0.43 2.7009 -0.9624 1 30.99 352.3 2.14 84.6 3.259 0.58 0.69 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; high strain Δ 31.0
T11
T11
139 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30562883
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash; high strain Δ 31.1, geometry warning, and strain ΔE = 31.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.8 · logP 2.77 · TPSA 66.5
48.8 0.53 1.7647 -1.0515 3 31.05 352.8 2.77 66.5 1.815 0.65 0.64 0 0 0.90
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash; high strain Δ 31.1
T11
T11
140 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z92413403
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 430.5 · logP 2.05 · TPSA 132.9
46.9 0.49 2.1977 -0.9292 2 22.93 430.5 2.05 132.9 2.305 0.52 0.61 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 22.9
T11
T11
141 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0430
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; high strain Δ 32.7, geometry warning, and strain ΔE = 32.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 318.4 · logP 2.34 · TPSA 95.8
47.5 0.45 3.2797 -1.1262 3 32.66 318.4 2.34 95.8 1.984 0.62 0.62 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; high strain Δ 32.7
T11
T11
142 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27739534
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash; high strain Δ 31.9, geometry warning, and strain ΔE = 31.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.4 · logP 2.49 · TPSA 104.3
46.2 0.39 3.0794 -0.9091 1 31.89 398.4 2.49 104.3 2.723 0.58 0.76 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash; high strain Δ 31.9
T11
T11
143 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC2_8
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash; high strain Δ 49.1, geometry warning, and strain ΔE = 49.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 354.4 · logP 3.50 · TPSA 56.1
44.9 0.44 2.6885 -0.8972 0 49.10 354.4 3.50 56.1 3.511 0.62 0.60 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash; high strain Δ 49.1
T11
T11
144 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_2405
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 365.4 · logP 2.02 · TPSA 87.3
45.2 0.42 2.7587 -0.8822 5 18.17 365.4 2.02 87.3 2.772 0.58 0.72 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes
T11
T11
145 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0432
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 4 protein contact clashes; moderate strain Δ 27.3, geometry warning, and strain ΔE = 27.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 398.4 · logP 3.33 · TPSA 110.3
46.3 0.53 1.4370 -0.8572 6 27.35 398.4 3.33 110.3 2.030 0.58 0.65 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 4 protein contact clashes; moderate strain Δ 27.3
T11
T11
146 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC552
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 367.4 · logP 1.06 · TPSA 123.1
43.5 0.36 3.1278 -0.8761 7 14.98 367.4 1.06 123.1 3.450 0.66 0.78 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes
T11
T11
147 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z124328460
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes; high strain Δ 34.0, geometry warning, and strain ΔE = 34.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.4 · logP 2.47 · TPSA 101.3
46.2 0.41 3.1735 -1.1251 1 34.03 331.4 2.47 101.3 1.884 0.62 0.68 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes; high strain Δ 34.0
T11
T11
148 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56811592
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 20.6, geometry warning, and strain ΔE = 20.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 375.5 · logP 2.47 · TPSA 92.4
42.9 0.49 2.1279 -0.9766 6 20.63 375.5 2.47 92.4 2.554 0.62 0.37 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 20.6
T11
T11
149 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
GemmaOHDUnisi_18
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; high strain Δ 58.2, geometry warning, and strain ΔE = 58.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 390.5 · logP 3.96 · TPSA 98.5
45.2 0.46 2.5893 -0.9273 0 58.18 390.5 3.96 98.5 2.459 0.58 0.62 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; high strain Δ 58.2
T11
T11
150 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57008911
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 314.3 · logP 1.19 · TPSA 98.7
46.3 0.42 2.9429 -1.0786 4 17.27 314.3 1.19 98.7 1.806 0.66 0.60 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes
T11
T11
151 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_188
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 422.5 · logP 4.60 · TPSA 71.3
43.0 0.43 2.1746 -0.7746 3 17.72 422.5 4.60 71.3 2.798 0.40 0.67 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T11
T11
152 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z14183817
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes, geometry warning, and strain ΔE = 19.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 383.8 · logP 3.18 · TPSA 82.0
42.7 0.29 4.1765 -0.8786 3 19.75 383.8 3.18 82.0 3.568 0.62 0.71 0 0 0.85
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T11
T11
153 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1159
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 26.4, geometry warning, and strain ΔE = 26.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 278.4 · logP 2.70 · TPSA 69.9
42.3 0.53 2.1444 -1.1738 8 26.36 278.4 2.70 69.9 2.623 0.67 0.58 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 26.4
T11
T11
154 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30004883
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 18 clashes; 1 protein clash; moderate strain Δ 25.0, geometry warning, and strain ΔE = 25.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 433.5 · logP 4.30 · TPSA 97.4
42.9 0.37 3.0506 -0.7759 1 25.04 433.5 4.30 97.4 1.988 0.36 0.70 0 0 0.47
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 18 clashes; 1 protein clash; moderate strain Δ 25.0
T11
T11
155 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC288
36% of hydrophobic surface appears solvent-exposed (8/22 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.5 · logP 3.58 · TPSA 92.4
41.8 0.51 1.9421 -0.9423 8 19.40 394.5 3.58 92.4 3.677 0.58 0.55 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T11
T11
156 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC369
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 9 protein contact clashes; high strain Δ 31.6, geometry warning, and strain ΔE = 31.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 427.5 · logP 3.96 · TPSA 100.6
43.6 0.51 1.9077 -0.9512 6 31.63 427.5 3.96 100.6 3.829 0.66 0.60 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 9 protein contact clashes; high strain Δ 31.6
T11
T11
157 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK218
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 423.5 · logP 3.89 · TPSA 100.6
41.7 0.30 3.7498 -0.7983 5 19.63 423.5 3.89 100.6 3.477 0.66 0.68 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
T11
T11
158 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57514561
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 3 protein contact clashes; moderate strain Δ 28.8, geometry warning, and strain ΔE = 28.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 455.6 · logP 4.12 · TPSA 88.1
36.4 0.55 1.0653 -0.7861 11 28.78 455.6 4.12 88.1 2.812 0.25 0.67 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 3 protein contact clashes; moderate strain Δ 28.8
T11
T11
159 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56174643
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 17 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 345.4 · logP 4.68 · TPSA 58.0
39.2 0.32 3.9986 -0.9668 9 18.34 345.4 4.68 58.0 2.655 0.62 0.64 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 17 clashes; 2 protein clashes
T11
T11
160 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_210
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 22.8, geometry warning, and strain ΔE = 22.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 393.5 · logP 1.59 · TPSA 59.8
45.2 0.36 3.4391 -0.9305 3 22.83 393.5 1.59 59.8 3.373 0.73 0.64 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 22.8
T11
T11
161 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49995281
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; high strain Δ 30.6, geometry warning, and strain ΔE = 30.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 364.4 · logP 1.39 · TPSA 118.4
45.3 0.40 3.1512 -0.9511 3 30.59 364.4 1.39 118.4 3.129 0.70 0.62 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; high strain Δ 30.6
T11
T11
162 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1455904573
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 21.7, geometry warning, and strain ΔE = 21.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 269.3 · logP 2.48 · TPSA 84.2
47.1 0.46 2.8464 -1.1859 3 21.70 269.3 2.48 84.2 1.546 0.67 0.70 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 21.7
T11
T11
163 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57906434
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 372.4 · logP 2.94 · TPSA 102.4
45.9 0.39 3.0238 -0.9723 2 12.25 372.4 2.94 102.4 2.206 0.58 0.61 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T11
T11
164 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27619347
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 26.7, geometry warning, and strain ΔE = 26.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 527.7 · logP 2.37 · TPSA 113.1
46.3 0.46 2.2332 -0.7715 2 26.74 527.7 2.37 113.1 2.875 0.55 0.63 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 26.7
T11
T11
165 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z31779235
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 21.9, geometry warning, and strain ΔE = 21.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 390.4 · logP 3.74 · TPSA 76.7
45.5 0.40 2.7777 -0.8306 3 21.92 390.4 3.74 76.7 1.784 0.58 0.61 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 1 protein clash; moderate strain Δ 21.9
T11
T11
166 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK47
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 24.7, geometry warning, and strain ΔE = 24.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 366.5 · logP 3.19 · TPSA 84.1
46.7 0.48 2.5415 -1.0919 4 24.71 366.5 3.19 84.1 3.324 0.70 0.64 0 0 0.42
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 24.7
T11
T11
167 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0768
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 41.3, geometry warning, and strain ΔE = 41.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 381.4 · logP -1.06 · TPSA 170.1
45.6 0.41 3.4430 -1.0510 2 41.32 381.4 -1.06 170.1 2.437 0.56 0.78 0 0 0.42
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 41.3
T11
T11
168 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56778174
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; high strain Δ 52.7, geometry warning, and strain ΔE = 52.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 342.4 · logP 3.04 · TPSA 91.2
43.5 0.37 3.7600 -1.0909 1 52.66 342.4 3.04 91.2 2.718 0.62 0.71 0 0 0.34
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; high strain Δ 52.7
T11
T11
169 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z55286499
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 3 protein clashes; high strain Δ 34.0, geometry warning, and strain ΔE = 34.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.4 · logP 1.99 · TPSA 110.5
46.5 0.34 4.1385 -1.2091 1 33.95 321.4 1.99 110.5 1.663 0.73 0.69 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; high strain Δ 34.0
T11
T11
170 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57728363
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; high strain Δ 51.5, geometry warning, and strain ΔE = 51.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 355.4 · logP 1.86 · TPSA 106.1
42.6 0.34 3.6303 -0.9472 1 51.54 355.4 1.86 106.1 3.981 0.70 0.70 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; high strain Δ 51.5
T11
T11
171 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0819
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 25.7, geometry warning, and strain ΔE = 25.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.4 · logP -0.16 · TPSA 119.3
45.3 0.39 3.1304 -0.9930 7 25.74 352.4 -0.16 119.3 2.218 0.73 0.74 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 25.7
T11
T11
172 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z167204554
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 27.6, geometry warning, and strain ΔE = 27.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 371.5 · logP 1.05 · TPSA 61.2
43.8 0.45 2.0915 -0.8886 4 27.58 371.5 1.05 61.2 3.065 0.73 0.42 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 27.6
T11
T11
173 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56850314
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.7, geometry warning, and strain ΔE = 25.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 349.4 · logP 4.30 · TPSA 78.3
44.6 0.34 3.7774 -0.9807 1 25.72 349.4 4.30 78.3 2.944 0.58 0.69 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.7
T11
T11
174 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45614063
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 21.8, geometry warning, and strain ΔE = 21.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 368.5 · logP 2.43 · TPSA 106.3
47.0 0.44 3.1427 -1.1339 3 21.76 368.5 2.43 106.3 1.876 0.62 0.62 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 21.8
T11
T11
175 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30270284
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 334.4 · logP 3.89 · TPSA 59.0
45.0 0.48 2.3032 -1.0613 6 15.69 334.4 3.89 59.0 2.972 0.62 0.67 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T11
T11
176 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_205
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 3 protein clashes; moderate strain Δ 22.8, geometry warning, and strain ΔE = 22.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 356.8 · logP 3.92 · TPSA 67.8
42.5 0.33 4.3659 -1.1036 6 22.82 356.8 3.92 67.8 2.061 0.62 0.68 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 3 protein clashes; moderate strain Δ 22.8
T11
T11
177 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_8
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 3 protein clashes; moderate strain Δ 27.5, geometry warning, and strain ΔE = 27.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 469.6 · logP 1.01 · TPSA 72.0
39.7 0.23 4.6631 -0.8062 2 27.49 469.6 1.01 72.0 4.839 0.66 0.66 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 3 protein clashes; moderate strain Δ 27.5
T11
T11
178 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_113
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; high strain Δ 43.0, geometry warning, and strain ΔE = 43.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 407.3 · logP 2.19 · TPSA 126.0
40.1 0.38 3.1400 -1.0266 1 43.02 407.3 2.19 126.0 2.646 0.55 0.53 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; high strain Δ 43.0
T11
T11
179 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19085615
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 1 protein clash; very favorable intra outlier; high strain Δ 46.2, geometry warning, and strain ΔE = 46.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 480.6 · logP 4.51 · TPSA 93.8
40.5 0.47 2.9065 -0.7852 5 46.22 480.6 4.51 93.8 2.852 0.25 0.78 0 0 0.38
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash; very favorable intra outlier; high strain Δ 46.2
T11
T11
180 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1163
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 24.8, geometry warning, and strain ΔE = 24.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 293.4 · logP 3.12 · TPSA 53.1
46.1 0.44 2.8908 -1.0918 4 24.77 293.4 3.12 53.1 2.493 0.73 0.56 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 24.8
T11
T11
181 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0475
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 39.2, geometry warning, and strain ΔE = 39.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 385.4 · logP 0.43 · TPSA 155.7
42.4 0.40 3.1356 -0.9722 1 39.24 385.4 0.43 155.7 2.013 0.50 0.68 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 39.2
T11
T11
182 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z25403655
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 24.5, geometry warning, and strain ΔE = 24.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 432.5 · logP 2.66 · TPSA 116.3
40.9 0.40 2.9238 -0.8182 9 24.48 432.5 2.66 116.3 2.984 0.55 0.74 0 0 0.47
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 24.5
T11
T11
183 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27604073
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; high strain Δ 51.3, geometry warning, and strain ΔE = 51.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 365.4 · logP 3.91 · TPSA 98.9
40.8 0.22 4.7689 -0.8931 0 51.32 365.4 3.91 98.9 2.206 0.58 0.77 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; high strain Δ 51.3
T11
T11
184 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_3783
Hydrophobic burial looks adequate: 32% exposed (8/25 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 21.3, geometry warning, and strain ΔE = 21.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 415.5 · logP 2.55 · TPSA 70.8
40.0 0.40 2.6350 -0.7715 8 21.26 415.5 2.55 70.8 3.897 0.62 0.61 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 21.3
T11
T11
185 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1134
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 25.7, geometry warning, and strain ΔE = 25.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 341.4 · logP 3.57 · TPSA 69.6
42.6 0.32 3.5608 -0.9115 1 25.66 341.4 3.57 69.6 2.730 0.62 0.54 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 25.7
T11
T11
186 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC57
Hydrophobic burial looks adequate: 23% exposed (7/31 atoms). No penalty flagged.
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 2 clashes; 1 protein clash; high strain Δ 64.0 and strain ΔE = 64.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 538.8 · logP 9.02 · TPSA 55.8
35.2 0.49 1.4110 -0.6610 7 63.96 538.8 9.02 55.8 5.486 0.07 0.60 0 0 0.14
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 2 clashes; 1 protein clash; high strain Δ 64.0
T11
T11
187 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56789391
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 328.3 · logP 2.78 · TPSA 102.2
45.8 0.40 3.4477 -1.1162 2 18.41 328.3 2.78 102.2 2.464 0.55 0.70 0 0 0.44
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes
T11
T11
188 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49597668
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 28.6, geometry warning, and strain ΔE = 28.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 414.9 · logP 3.30 · TPSA 100.5
46.6 0.45 2.1277 -0.8663 2 28.63 414.9 3.30 100.5 2.087 0.55 0.69 0 0 0.48
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 28.6
T11
T11
189 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56821783
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes; high strain Δ 32.5, geometry warning, and strain ΔE = 32.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 332.4 · logP 0.14 · TPSA 77.4
44.5 0.36 3.5201 -1.0492 3 32.49 332.4 0.14 77.4 2.938 0.70 0.70 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; high strain Δ 32.5
T11
T11
190 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z95717428
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 27.2, geometry warning, and strain ΔE = 27.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.4 · logP 3.46 · TPSA 63.1
43.7 0.39 3.0420 -0.9180 5 27.15 347.4 3.46 63.1 1.995 0.62 0.64 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; moderate strain Δ 27.2
T11
T11
191 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z71577027
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 29.9, geometry warning, and strain ΔE = 29.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 369.4 · logP 2.84 · TPSA 108.4
44.3 0.27 4.4795 -0.9335 1 29.85 369.4 2.84 108.4 1.882 0.58 0.78 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 29.9
T11
T11
192 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56976985
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 20.8, geometry warning, and strain ΔE = 20.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 328.8 · logP 3.40 · TPSA 83.3
43.2 0.33 3.9034 -1.0402 2 20.81 328.8 3.40 83.3 2.362 0.58 0.62 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 20.8
T11
T11
193 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z2752015126
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 29.2, geometry warning, and strain ΔE = 29.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 399.4 · logP 3.60 · TPSA 103.8
40.7 0.31 3.5986 -0.8600 1 29.18 399.4 3.60 103.8 4.317 0.58 0.68 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes; moderate strain Δ 29.2
T11
T11
194 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z55260483
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; high strain Δ 32.6, geometry warning, and strain ΔE = 32.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.5 · logP 1.15 · TPSA 123.4
42.2 0.44 2.7808 -0.9603 4 32.56 400.5 1.15 123.4 4.009 0.63 0.53 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; high strain Δ 32.6
T11
T11
195 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z71526968
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 41.1, geometry warning, and strain ΔE = 41.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.5 · logP 1.91 · TPSA 118.5
42.7 0.41 2.4327 -0.8044 3 41.07 428.5 1.91 118.5 2.146 0.60 0.73 0 0 0.52
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 41.1
T11
T11
196 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z32421752
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; high strain Δ 33.3, geometry warning, and strain ΔE = 33.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 403.9 · logP 0.56 · TPSA 149.4
41.9 0.32 4.2457 -1.0618 2 33.32 403.9 0.56 149.4 1.963 0.60 0.56 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; high strain Δ 33.3
T11
T11
197 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z87656593
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash; high strain Δ 47.4, geometry warning, and strain ΔE = 47.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 421.5 · logP 2.13 · TPSA 109.6
38.8 0.47 2.1761 -0.8797 8 47.45 421.5 2.13 109.6 2.563 0.58 0.52 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; high strain Δ 47.4
T11
T11
198 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57695216
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 2 protein clashes; high strain Δ 37.7, geometry warning, and strain ΔE = 37.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 367.4 · logP 3.53 · TPSA 91.6
40.0 0.29 4.2594 -0.9146 2 37.70 367.4 3.53 91.6 2.756 0.62 0.51 0 0 0.81
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 2 protein clashes; high strain Δ 37.7
T11
T11
199 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_115
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 2 protein clashes; high strain Δ 35.0, geometry warning, and strain ΔE = 35.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 483.4 · logP 2.35 · TPSA 139.1
41.9 0.33 3.4268 -0.8476 1 35.00 483.4 2.35 139.1 2.547 0.52 0.69 0 0 0.47
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes; high strain Δ 35.0
T11
T11
200 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56174682
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 24.9, geometry warning, and strain ΔE = 24.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 334.4 · logP 3.99 · TPSA 70.9
44.4 0.40 3.0828 -1.0164 4 24.86 334.4 3.99 70.9 2.952 0.62 0.70 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 24.9
Score composition ▼ show
Docking 28% · final rank, interaction-normalized score, raw docking score
Burial 18% · absolute exposed hydrophobic atom count (lower is better)
Strain 14% · strain delta, intra score, geometry sanity
Safety / ADMET 18% · ADMET score with hERG/AMES/DILI/bioaccumulation penalties — Pareto objective
Ecotoxicology 9% · fish/daphnia/algae LC50 classes + bioaccumulation + persistence — Pareto objective
Synthesis 10% · SA score when available, otherwise Fsp3 proxy
Native similarity 12% · contact and H-bond recall when a native reference exists
Diversity shortlist 0% · cached shortlist already includes the novelty-aware selection step

How ranking works: Pareto fronts are built from six default objectives — docking score, ligand efficiency, burial depth, strain energy, ADMET safety, and ecotoxicology (fish/daphnia/algae LC₅₀ + bioaccumulation + persistence). Front 1 contains non-dominated ligands: no other ligand beats them across all six objectives simultaneously. Inside each front, ligands are ordered by a compromise score with explicit penalties for PAINS, reactivity, toxicity alerts, geometry warnings, excluded poses, and artifact annotations. The top 200 are returned using a diversity-aware selection step.

Methodology ▼ show
1. Candidate definition. For each target we keep one best pose per ligand, so the shortlist is not inflated by many similar poses of the same compound.
2. Objective set. Each ligand is evaluated across docking quality, absolute nonpolar solvent exposure (`n_exposed`), conformational strain, native-like interaction similarity when a native reference exists, safety and ecotoxicology, synthesizability, and general developability indicators such as QED.
2a. SASA / burial source. `SASA: done` = cached FreeSASA metrics. `queued/running` = background worker scheduled. `failed` = worker failed. `missing` = no SASA cached yet.
3. Liability penalties. PAINS motifs, reactive groups, toxicity alerts, artifact annotations, geometry warnings, and excluded-pose flags reduce the compromise score and are shown explicitly.
4. Pareto ranking. Front 1 = non-dominated ligands (no other ligand is better in all objectives simultaneously). Lower front number = more balanced profile.
5. Missing SASA handling. Missing SASA lowers `Data completeness` to `Provisional` but does not automatically reject a ligand. Binding and geometry axes stay independent.
6. Compromise score. `100 × clamp(weighted positive − liability penalty − missing-data penalty)`. Weights: docking 28%, burial 18%, strain 14%, safety/ecotox 18%, synthesis 10%, native similarity 12% (when reference exists).
7. Component details. Docking = `final_rank_score` 55% + `score_inter_norm` 30% + raw `score` 15%. Strain = `strain_delta` 55% + `score_intra_norm` 30% + geometry sanity 15%.
8. Final shortlist. Top 50 per target taken front-by-front with diversity-aware selection — near-duplicate analogs do not dominate.
How to read the table. `Pareto` = non-dominated layer, `Compromise` = within-front ordering score, `n_exposed` = burial proxy (lower is better), `Strain dE` = conformational stress, colored dots = quick green/orange/red cue.
How to use selections. Mark compounds row-by-row, save to `Current`/`Temp`/`A/B/C` sets, export to SDF/XLSX/CSV, or send to downstream analysis pages.