FAIRMol

Ligand prioritization

Interactive top-50 shortlist per target built from a transparent multi-objective workflow. It combines docking quality, absolute exposed hydrophobic atoms, low strain, safety/ecotox, synthesizability, and native-contact similarity when a native reference exists, then uses Pareto fronts plus a compromise score to expose the most balanced ligands.

DB fairmol
200 shortlisted rows 1 targets
L. infantum R5P · T10
L. infantum
Protein: Ribose-5-phosphate isomerase B
Targets
1
each capped at 50 ligands
Best-pose candidates
582
one best pose per ligand per target
Synth metric
SA score
direct SA metric
Absolute burial proxy
n_exposed
absolute exposed hydrophobic atoms, not fraction
Pareto front 1
12
non-dominated ligands across all selected targets
Burial source
FreeSASA 200
Proxy 0 · Missing 0
Metrics coverage
Done 200
Pending 0 · Failed 0 · Missing 0
Diversity shortlist
Novelty 0.45
High novelty 200 · Close analogs 0
New vs legacy top 50
Added 3 · Dropped 3
Stayed 197 of 200 legacy picks
T10
Native Front 1: 12
200 / 582 shortlisted
Best: Z2939836159 · score 72.5
Pareto layers observed: 14
Metrics: done 200 · pending 0 · failed 0 · missing 0
Diversity: novelty 0.45 · close analogs 0
New vs legacy: added 3 · dropped 3 · stayed 197/200
Added: ulfkktlib_626, Z25217831, OHD_Leishmania_143 · Dropped: KB_Leish_55, MK219, OSA_Lib_77
Table view
Switch between a compact decision view, medicinal chemistry properties, and the full docking inspection layout.
Target 2D Rank Pareto Assessment Ligand Compromise Docking Final rank Inter norm n_exposed Strain dE MW cLogP TPSA SA score Safety Native sim PAINS Reactive QED SASA Flags
T10
T10
1 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z2939836159
strong docking, well-buried hydrophobics, native-like contacts
Details
Why selected: Strong docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: 2 protein clashes.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 171.2 · logP -1.46 · TPSA 117.8
72.5 0.89 1.3869 -2.3660 3 11.79 171.2 -1.46 117.8 3.400 0.73 0.86 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
2 protein clashes
T10
T10
2 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56347099
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 2 clashes; 1 protein clash and strain ΔE = 18.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 288.4 · logP 2.87 · TPSA 68.1
64.9 0.61 2.0181 -1.4077 2 18.65 288.4 2.87 68.1 2.775 0.76 0.79 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 2 clashes; 1 protein clash
T10
T10
3 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1198149433
strong docking, well-buried hydrophobics, native-like contacts
Details
Why selected: Strong docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 176.2 · logP 1.37 · TPSA 62.0
64.8 0.80 1.0488 -1.9466 0 7.52 176.2 1.37 62.0 2.167 0.76 0.83 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 1 protein clash
T10
T10
4 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1612297151
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 206.7 · logP 0.96 · TPSA 72.2
62.6 0.71 2.2728 -1.9934 0 14.13 206.7 0.96 72.2 1.763 0.76 0.73 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 2 protein clashes
T10
T10
5 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56802793
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 294.4 · logP 3.38 · TPSA 46.5
61.6 0.74 0.9142 -1.4195 1 14.47 294.4 3.38 46.5 2.495 0.73 0.80 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 1 protein clash
T10
T10
6 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z594284196
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 1 clash; 2 protein clashes.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 244.2 · logP -3.01 · TPSA 143.7
58.5 0.54 2.6562 -1.4175 1 16.24 244.2 -3.01 143.7 3.869 0.60 0.70 0 0 0.44
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 1 clash; 2 protein clashes
T10
T10
7 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49539320
native-like contacts, clean safety profile, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 242.3 · logP 2.25 · TPSA 70.4
55.5 0.67 1.6272 -1.4147 7 9.15 242.3 2.25 70.4 2.227 0.76 0.71 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash
T10
T10
8 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z21485324
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 294.3 · logP 3.30 · TPSA 75.6
53.9 0.36 4.4806 -1.2851 0 4.73 294.3 3.30 75.6 2.240 0.70 0.88 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T10
T10
9 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z14006601
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 316.4 · logP 4.18 · TPSA 48.2
54.3 0.47 3.0024 -1.0938 1 9.66 316.4 4.18 48.2 1.923 0.73 0.69 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes
T10
T10
10 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56845221
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 308.5 · logP 3.86 · TPSA 46.5
57.1 0.71 1.2062 -1.3595 2 15.02 308.5 3.86 46.5 2.450 0.62 0.69 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 1 protein clash
T10
T10
11 1
Front 1 (non-dominated)
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z18451981
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: 4 protein clashes.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 364.5 · logP 3.62 · TPSA 73.8
47.9 0.36 3.9074 -1.0429 13 11.13 364.5 3.62 73.8 2.527 0.62 0.77 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
4 protein clashes
T10
T10
12 1
Front 1 (non-dominated)
Binding Medium
Geometry Suspicious
Data Complete
Action Inspect
6FXW
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: Native reference ligand.
Action: Inspect the pose manually, especially around clashes, hydrogen bonds, and pocket fit.
MW 258.1 · logP -2.39 · TPSA 164.1
40.4 0.00 - - 4 - 258.1 -2.39 164.1 4.789 0.32 1.00 0 0 0.29
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Native reference ligand
T10
T10
13 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57201291
strong docking, well-buried hydrophobics, native-like contacts
Details
Why selected: Strong docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 1 clash; 2 protein clashes.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 176.1 · logP -1.41 · TPSA 107.2
68.2 0.86 0.9616 -2.1098 5 14.98 176.1 -1.41 107.2 3.678 0.70 0.84 0 0 0.39
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 1 clash; 2 protein clashes
T10
T10
14 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1295
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 1 clash; 1 protein clash.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 241.3 · logP 1.19 · TPSA 76.4
64.8 0.72 0.8122 -1.4231 7 11.51 241.3 1.19 76.4 2.575 0.73 0.86 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 1 clash; 1 protein clash
T10
T10
15 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0523
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 201.2 · logP 0.03 · TPSA 97.5
61.4 0.69 2.2303 -1.8646 0 19.56 201.2 0.03 97.5 1.531 0.73 0.78 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 2 protein clashes
T10
T10
16 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1069312128
strong docking, well-buried hydrophobics, native-like contacts
Details
Why selected: Strong docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 190.2 · logP 1.03 · TPSA 62.0
61.1 0.76 1.3272 -1.8156 1 19.17 190.2 1.03 62.0 2.479 0.76 0.79 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 1 protein clash
T10
T10
17 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z223042524
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 212.2 · logP 0.62 · TPSA 86.2
59.0 0.61 2.8254 -1.7981 0 14.72 212.2 0.62 86.2 2.368 0.73 0.80 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes
T10
T10
18 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z2939811157
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 24.6, geometry warning, and strain ΔE = 24.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 213.6 · logP 1.80 · TPSA 69.9
57.0 0.54 3.4329 -1.6999 1 24.59 213.6 1.80 69.9 2.249 0.76 0.82 0 0 0.46
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 3 protein clashes; moderate strain Δ 24.6
T10
T10
19 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC2_29
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 254.3 · logP 2.72 · TPSA 63.8
55.8 0.64 1.8754 -1.3810 0 15.86 254.3 2.72 63.8 1.866 0.67 0.68 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 9 clashes; 1 protein clash
T10
T10
20 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1037335854
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.1 · logP 2.43 · TPSA 59.3
55.7 0.62 2.3140 -1.5637 1 17.10 281.1 2.43 59.3 3.685 0.76 0.68 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T10
T10
21 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_2271
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.2, geometry warning, and strain ΔE = 22.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 224.2 · logP 1.79 · TPSA 74.6
54.8 0.48 4.0174 -1.7210 0 22.22 224.2 1.79 74.6 1.890 0.76 0.72 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.2
T10
T10
22 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45956756
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 263.3 · logP 3.82 · TPSA 53.4
55.4 0.60 2.1885 -1.3239 2 6.88 263.3 3.82 53.4 2.238 0.73 0.56 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
23 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19703650
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 4 clashes; 11 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 275.3 · logP 1.46 · TPSA 88.8
52.2 0.73 0.9517 -1.3898 10 16.87 275.3 1.46 88.8 1.864 0.73 0.63 0 0 0.81
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 11 protein contact clashes
T10
T10
24 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49718975
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 264.7 · logP 1.99 · TPSA 90.6
53.0 0.43 4.2529 -1.5084 1 11.93 264.7 1.99 90.6 2.445 0.73 0.76 0 0 0.45
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes
T10
T10
25 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1147226530
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 258.2 · logP 2.45 · TPSA 76.2
52.6 0.47 3.4116 -1.3511 1 13.23 258.2 2.45 76.2 2.096 0.62 0.78 0 0 0.89
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes
T10
T10
26 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_227
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 272.3 · logP 3.44 · TPSA 46.5
50.4 0.35 4.2204 -1.2245 3 12.07 272.3 3.44 46.5 1.920 0.76 0.77 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T10
T10
27 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z115639094
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 363.2 · logP 3.80 · TPSA 59.1
50.3 0.45 3.1605 -1.1276 0 14.47 363.2 3.80 59.1 1.860 0.62 0.58 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T10
T10
28 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z18921862
clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 10 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 295.3 · logP 2.69 · TPSA 68.5
49.0 0.53 2.4268 -1.1911 9 9.25 295.3 2.69 68.5 2.026 0.76 0.63 0 0 0.81
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash
T10
T10
29 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z53035387
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 317.4 · logP 2.13 · TPSA 74.7
48.6 0.28 4.7283 -1.0971 0 16.05 317.4 2.13 74.7 1.823 0.65 0.78 0 0 0.94
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T10
T10
30 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_2
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.3 · logP 2.85 · TPSA 87.6
45.7 0.49 2.8884 -1.0183 9 7.74 321.3 2.85 87.6 2.588 0.58 0.64 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T10
T10
31 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z276351322
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 238.2 · logP 3.11 · TPSA 59.2
47.4 0.41 3.9606 -1.3466 6 5.21 238.2 3.11 59.2 1.794 0.73 0.53 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T10
T10
32 2
Front 2
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK29
native-like contacts, clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 342.4 · logP 4.31 · TPSA 69.9
41.1 0.43 3.3614 -1.0661 15 9.76 342.4 4.31 69.9 2.737 0.76 0.66 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T10
T10
33 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z2588062695
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: 3 protein clashes; moderate strain Δ 22.2 and strain ΔE = 22.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 198.2 · logP -0.34 · TPSA 107.2
61.5 0.55 3.1503 -1.7557 3 22.23 198.2 -0.34 107.2 3.017 0.73 0.88 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
3 protein clashes; moderate strain Δ 22.2
T10
T10
34 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49907343
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 7 protein contact clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 280.4 · logP 3.49 · TPSA 46.0
58.2 0.67 0.9683 -1.2594 1 14.84 280.4 3.49 46.0 2.528 0.73 0.78 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 7 protein contact clashes
T10
T10
35 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK144
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 191.2 · logP 1.54 · TPSA 66.5
57.0 0.57 2.8010 -1.7374 1 9.78 191.2 1.54 66.5 2.097 0.76 0.77 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes
T10
T10
36 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z995094004
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 202.6 · logP 1.07 · TPSA 49.7
56.7 0.60 2.8159 -1.9085 2 15.64 202.6 1.07 49.7 2.102 0.76 0.82 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 4 protein clashes
T10
T10
37 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0139
well-buried hydrophobics, native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 2 protein clashes; moderate strain Δ 25.5, geometry warning, and strain ΔE = 25.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 225.2 · logP -0.48 · TPSA 97.0
55.0 0.65 2.0421 -1.5833 1 25.51 225.2 -0.48 97.0 4.125 0.73 0.68 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 2 protein clashes; moderate strain Δ 25.5
T10
T10
38 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0249
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 27.3, geometry warning, and strain ΔE = 27.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 247.7 · logP 0.61 · TPSA 98.5
56.6 0.69 1.7483 -1.5920 1 27.32 247.7 0.61 98.5 2.271 0.73 0.59 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 27.3
T10
T10
39 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z372953774
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 23.7, geometry warning, and strain ΔE = 23.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 215.2 · logP 1.56 · TPSA 79.6
56.1 0.58 2.9786 -1.6518 0 23.67 215.2 1.56 79.6 2.602 0.70 0.77 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 23.7
T10
T10
40 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z28179969
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 10 protein contact clashes, geometry warning, and strain ΔE = 19.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.5 · logP 3.59 · TPSA 79.6
55.5 0.75 0.9688 -1.1237 6 19.43 352.5 3.59 79.6 2.688 0.58 0.72 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 10 protein contact clashes
T10
T10
41 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC345
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 222.2 · logP -0.19 · TPSA 107.0
55.0 0.55 3.5204 -1.7721 2 12.89 222.2 -0.19 107.0 3.167 0.73 0.80 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein clashes
T10
T10
42 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49547294
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 24.6, geometry warning, and strain ΔE = 24.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 257.2 · logP 1.26 · TPSA 94.8
54.7 0.69 2.3565 -1.6572 7 24.57 257.2 1.26 94.8 2.196 0.73 0.75 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 24.6
T10
T10
43 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19456127
well-buried hydrophobics, native-like contacts, clean safety profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 278.3 · logP 2.15 · TPSA 74.5
54.4 0.58 2.0710 -1.3222 3 16.51 278.3 2.15 74.5 2.309 0.76 0.69 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 1 protein clash
T10
T10
44 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_3082
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 20.6, geometry warning, and strain ΔE = 20.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 273.2 · logP 0.90 · TPSA 128.4
50.4 0.45 3.4075 -1.2208 0 20.61 273.2 0.90 128.4 2.292 0.70 0.55 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 20.6
T10
T10
45 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC270
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.3 · logP 2.60 · TPSA 71.2
50.3 0.33 4.5654 -1.3446 1 11.47 281.3 2.60 71.2 2.084 0.73 0.80 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T10
T10
46 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56821783
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 331.4 · logP 2.06 · TPSA 75.8
51.0 0.59 2.0462 -1.2153 4 15.75 331.4 2.06 75.8 2.217 0.58 0.67 0 0 0.82
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T10
T10
47 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z966775152
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 254.2 · logP 2.41 · TPSA 86.5
51.4 0.46 3.1835 -1.2703 0 17.62 254.2 2.41 86.5 2.109 0.70 0.61 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
48 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_273
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 270.7 · logP 3.24 · TPSA 63.8
53.7 0.57 2.6401 -1.4010 0 15.62 270.7 3.24 63.8 1.925 0.67 0.68 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
49 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_272
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 270.7 · logP 3.24 · TPSA 63.8
54.1 0.58 2.5869 -1.4236 0 15.76 270.7 3.24 63.8 1.860 0.67 0.68 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
50 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC272
native-like contacts, clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 254.3 · logP 2.46 · TPSA 61.7
48.6 0.45 3.3518 -1.3142 9 9.63 254.3 2.46 61.7 1.781 0.76 0.78 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T10
T10
51 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z25403962
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 324.4 · logP 4.45 · TPSA 61.6
46.7 0.36 4.2743 -1.0951 7 9.98 324.4 4.45 61.6 2.028 0.62 0.83 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 3 protein clashes
T10
T10
52 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49539235
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.2 · logP 3.01 · TPSA 70.4
49.9 0.58 2.2748 -1.2729 7 13.91 321.2 3.01 70.4 2.368 0.65 0.64 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash
T10
T10
53 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0153
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes; moderate strain Δ 23.9, geometry warning, and strain ΔE = 23.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 225.2 · logP -0.65 · TPSA 97.0
49.0 0.38 4.7650 -1.6471 0 23.86 225.2 -0.65 97.0 4.247 0.73 0.78 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; moderate strain Δ 23.9
T10
T10
54 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56832158
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 305.4 · logP 4.52 · TPSA 58.0
44.9 0.41 3.3679 -1.0332 7 7.89 305.4 4.52 58.0 2.136 0.62 0.64 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
55 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC324
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 304.4 · logP 1.97 · TPSA 72.2
45.9 0.41 3.6149 -1.2194 10 8.78 304.4 1.97 72.2 1.702 0.73 0.73 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
T10
T10
56 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56779935
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 293.3 · logP 1.69 · TPSA 106.1
43.0 0.20 5.7013 -1.1377 9 7.02 293.3 1.69 106.1 2.233 0.73 0.90 0 0 0.40
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes
T10
T10
57 3
Front 3
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC271
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 297.3 · logP 2.30 · TPSA 91.4
48.5 0.47 3.0380 -1.1326 8 7.82 297.3 2.30 91.4 2.229 0.70 0.74 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T10
T10
58 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z88883356
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 320.3 · logP 2.51 · TPSA 75.3
55.1 0.51 2.5726 -1.1230 0 18.00 320.3 2.51 75.3 2.005 0.62 0.89 0 0 0.91
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T10
T10
59 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC287
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 234.3 · logP 0.39 · TPSA 97.2
55.7 0.56 3.5104 -1.8538 2 15.23 234.3 0.39 97.2 2.497 0.73 0.88 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein clashes
T10
T10
60 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56781613
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 280.7 · logP 1.50 · TPSA 97.0
52.8 0.50 2.7894 -1.2482 3 14.27 280.7 1.50 97.0 2.285 0.73 0.73 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 2 protein clashes
T10
T10
61 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0248
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 2 protein clashes; moderate strain Δ 27.0, geometry warning, and strain ΔE = 27.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 278.1 · logP 0.41 · TPSA 98.5
55.4 0.64 2.4319 -1.7295 1 26.98 278.1 0.41 98.5 2.177 0.73 0.59 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 2 protein clashes; moderate strain Δ 27.0
T10
T10
62 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z25103234
well-buried hydrophobics, clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 308.4 · logP 2.59 · TPSA 61.3
50.8 0.53 2.3873 -1.2368 5 15.78 308.4 2.59 61.3 2.251 0.76 0.63 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash
T10
T10
63 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30199023
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 21.4, geometry warning, and strain ΔE = 21.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 325.3 · logP 2.84 · TPSA 77.1
49.2 0.63 2.1513 -1.1053 9 21.38 325.3 2.84 77.1 2.035 0.58 0.63 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 21.4
T10
T10
64 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29467616
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 16 protein contact clashes; moderate strain Δ 24.3, geometry warning, and strain ΔE = 24.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 388.5 · logP 3.09 · TPSA 95.8
48.6 0.54 2.4160 -1.0105 7 24.35 388.5 3.09 95.8 2.524 0.58 0.82 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 16 protein contact clashes; moderate strain Δ 24.3
T10
T10
65 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK49
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 5 clashes; 1 protein clash; moderate strain Δ 20.3, geometry warning, and strain ΔE = 20.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 336.5 · logP 4.61 · TPSA 48.2
49.1 0.56 2.0304 -1.1381 7 20.27 336.5 4.61 48.2 2.958 0.73 0.68 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 1 protein clash; moderate strain Δ 20.3
T10
T10
66 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z165420976
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 270.3 · logP 1.46 · TPSA 95.4
47.3 0.46 3.4288 -1.2771 8 13.21 270.3 1.46 95.4 1.632 0.73 0.62 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
67 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57009636
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 315.3 · logP 1.60 · TPSA 88.0
47.6 0.46 3.4257 -1.2560 10 10.32 315.3 1.60 88.0 2.587 0.73 0.85 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
68 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z25107081
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 292.3 · logP 2.64 · TPSA 76.2
46.1 0.26 5.4066 -1.3620 3 11.71 292.3 2.64 76.2 2.548 0.70 0.79 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 4 protein clashes
T10
T10
69 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49615771
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 29.0, geometry warning, and strain ΔE = 29.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 256.3 · logP 1.86 · TPSA 81.9
49.9 0.55 3.8163 -1.6655 8 29.02 256.3 1.86 81.9 1.892 0.73 0.74 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes; moderate strain Δ 29.0
T10
T10
70 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1515385080
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 3 protein clashes; high strain Δ 38.8, geometry warning, and strain ΔE = 38.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 310.3 · logP 0.30 · TPSA 119.7
45.0 0.33 4.5166 -1.1738 0 38.78 310.3 0.30 119.7 2.909 0.67 0.83 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 8 clashes; 3 protein clashes; high strain Δ 38.8
T10
T10
71 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19081445
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 22.0, geometry warning, and strain ΔE = 22.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 1.78 · TPSA 104.3
45.5 0.54 2.0757 -0.9458 11 21.98 409.5 1.78 104.3 2.417 0.66 0.71 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 22.0
T10
T10
72 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49615969
native-like contacts, clean safety profile, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 282.3 · logP 3.28 · TPSA 61.7
49.1 0.56 1.9976 -1.2287 11 18.21 282.3 3.28 61.7 1.832 0.76 0.81 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash
T10
T10
73 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_50
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 252.3 · logP 2.16 · TPSA 74.7
48.4 0.49 3.0763 -1.3644 5 8.76 252.3 2.16 74.7 2.303 0.73 0.52 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T10
T10
74 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC280
native-like contacts, clean safety profile, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 21.6, geometry warning, and strain ΔE = 21.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 254.3 · logP 2.46 · TPSA 61.7
49.5 0.59 1.6595 -1.2804 8 21.57 254.3 2.46 61.7 1.849 0.76 0.66 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash; moderate strain Δ 21.6
T10
T10
75 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27776449
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 359.2 · logP 2.40 · TPSA 86.9
43.1 0.50 3.0649 -1.1579 8 16.75 359.2 2.40 86.9 2.151 0.52 0.68 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T10
T10
76 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49724509
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash; high strain Δ 32.8, geometry warning, and strain ΔE = 32.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.3 · logP 4.56 · TPSA 85.4
43.6 0.69 1.8894 -1.4560 11 32.83 409.3 4.56 85.4 2.993 0.40 0.81 0 0 0.29
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash; high strain Δ 32.8
T10
T10
77 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z115639322
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 324.8 · logP 3.75 · TPSA 59.1
46.6 0.60 1.8342 -1.2263 9 19.46 324.8 3.75 59.1 2.121 0.62 0.59 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 1 protein clash
T10
T10
78 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC275
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 299.3 · logP 2.74 · TPSA 71.2
49.9 0.33 4.4896 -1.2791 1 13.77 299.3 2.74 71.2 2.156 0.73 0.80 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T10
T10
79 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z21488718
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 294.3 · logP 3.30 · TPSA 75.6
47.8 0.42 3.3781 -1.1737 8 8.17 294.3 3.30 75.6 2.188 0.70 0.83 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T10
T10
80 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0527
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 1 protein clash, geometry warning, and tox alerts x2.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 276.3 · logP 2.33 · TPSA 110.9
42.9 0.57 2.5492 -1.4088 6 16.36 276.3 2.33 110.9 2.222 0.39 0.81 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x2, Geometry warning, geometry warning; 8 clashes; 1 protein clash
T10
T10
81 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC394
native-like contacts
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 7 protein contact clashes; moderate strain Δ 23.0, geometry warning, and strain ΔE = 23.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 428.5 · logP 4.30 · TPSA 108.8
43.0 0.66 1.5403 -1.0769 14 23.03 428.5 4.30 108.8 3.809 0.48 0.85 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 7 protein contact clashes; moderate strain Δ 23.0
T10
T10
82 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z115639370
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 369.3 · logP 3.86 · TPSA 59.1
44.8 0.52 2.6778 -1.2468 9 19.38 369.3 3.86 59.1 2.166 0.62 0.63 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes
T10
T10
83 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56773008
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 340.4 · logP 4.07 · TPSA 69.3
37.6 0.34 4.6460 -1.1761 15 11.07 340.4 4.07 69.3 2.377 0.62 0.74 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes
T10
T10
84 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z46033738
native-like contacts, clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 4 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 292.3 · logP 3.93 · TPSA 57.5
37.8 0.20 5.0234 -1.0872 12 11.57 292.3 3.93 57.5 2.282 0.76 0.76 0 0 0.82
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 4 protein clashes
T10
T10
85 4
Front 4
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z28180197
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 4 protein clashes, geometry warning, and strain ΔE = 19.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 360.5 · logP 3.95 · TPSA 79.6
38.1 0.19 6.0098 -0.9947 10 19.61 360.5 3.95 79.6 2.436 0.58 0.82 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 4 protein clashes
T10
T10
86 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1274773112
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 20.4, geometry warning, and strain ΔE = 20.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 205.2 · logP 0.52 · TPSA 92.0
57.5 0.63 2.1418 -1.6128 1 20.38 205.2 0.52 92.0 2.641 0.73 0.85 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 20.4
T10
T10
87 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45636695
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 22.0, geometry warning, and strain ΔE = 22.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 215.2 · logP 0.76 · TPSA 83.5
55.6 0.54 3.2865 -1.7365 2 22.01 215.2 0.76 83.5 1.577 0.73 0.85 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 22.0
T10
T10
88 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z53223394
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 312.4 · logP 0.32 · TPSA 118.0
51.1 0.49 2.8786 -1.2098 5 17.33 312.4 0.32 118.0 2.865 0.73 0.81 0 0 0.75
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 2 protein clashes
T10
T10
89 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_491
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 21.1, geometry warning, and strain ΔE = 21.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 285.3 · logP 0.89 · TPSA 94.2
49.3 0.50 2.7034 -1.2052 8 21.08 285.3 0.89 94.2 2.014 0.73 0.84 0 0 0.87
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 21.1
T10
T10
90 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z31309289
native-like contacts, clean safety profile, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 274.3 · logP 2.90 · TPSA 62.4
48.5 0.46 2.8539 -1.2217 9 12.02 274.3 2.90 62.4 2.104 0.76 0.87 0 0 0.62
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash
T10
T10
91 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z29467292
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 16 protein contact clashes, geometry warning, and strain ΔE = 18.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 349.4 · logP 2.82 · TPSA 102.0
51.0 0.53 2.2973 -1.1157 2 18.90 349.4 2.82 102.0 2.678 0.58 0.81 0 0 0.45
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 16 protein contact clashes
T10
T10
92 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49646854
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 407.3 · logP 4.08 · TPSA 58.5
46.5 0.48 2.8378 -1.1253 1 22.86 407.3 4.08 58.5 2.443 0.46 0.63 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 22.9
T10
T10
93 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0824
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 266.3 · logP 0.15 · TPSA 117.9
46.3 0.42 3.8049 -1.3645 4 18.39 266.3 0.15 117.9 2.355 0.73 0.48 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
T10
T10
94 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC250
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 297.3 · logP 1.72 · TPSA 83.0
46.3 0.43 3.6623 -1.2612 10 12.21 297.3 1.72 83.0 2.811 0.73 0.84 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T10
T10
95 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49719002
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 8 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 280.7 · logP 1.69 · TPSA 110.9
49.5 0.50 3.5973 -1.5569 5 18.43 280.7 1.69 110.9 2.708 0.70 0.78 0 0 0.39
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 3 protein clashes
T10
T10
96 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z51114828
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 359.4 · logP 1.49 · TPSA 90.0
44.9 0.42 3.1737 -0.9732 9 14.19 359.4 1.49 90.0 2.368 0.73 0.63 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
97 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z275164792
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 321.2 · logP 2.63 · TPSA 64.3
44.4 0.50 2.8156 -1.2799 8 17.79 321.2 2.63 64.3 1.801 0.59 0.73 0 0 0.52
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T10
T10
98 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19696461
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.4 · logP 2.97 · TPSA 80.9
42.0 0.13 5.6845 -0.9704 2 15.92 352.4 2.97 80.9 2.304 0.70 0.75 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 3 protein clashes
T10
T10
99 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49547116
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 28.6, geometry warning, and strain ΔE = 28.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 310.1 · logP 2.86 · TPSA 74.6
45.5 0.51 3.0005 -1.2514 8 28.56 310.1 2.86 74.6 2.236 0.65 0.61 0 0 0.68
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes; moderate strain Δ 28.6
T10
T10
100 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27749333
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 22.6, geometry warning, and strain ΔE = 22.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 358.5 · logP 2.55 · TPSA 66.5
41.0 0.53 2.0013 -0.9779 13 22.64 358.5 2.55 66.5 2.213 0.65 0.55 0 0 0.89
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 22.6
T10
T10
101 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_2500
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 278.3 · logP 4.97 · TPSA 54.2
39.3 0.52 2.5728 -1.1942 10 11.95 278.3 4.97 54.2 2.118 0.45 0.59 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 12 clashes; 1 protein clash
T10
T10
102 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z31261051
reasonable synthesis profile
Details
Why selected: Good docking score, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 5 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.0 · logP 4.39 · TPSA 72.0
40.2 0.55 1.8667 -1.0336 11 19.51 400.0 4.39 72.0 2.605 0.43 0.63 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 1 protein clash
T10
T10
103 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_chagas_214
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 414.4 · logP 2.98 · TPSA 80.0
37.1 0.30 4.0418 -0.8049 7 17.03 414.4 2.98 80.0 3.544 0.44 0.72 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
104 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56857031
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 23.1, geometry warning, and strain ΔE = 23.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 304.4 · logP 2.82 · TPSA 88.1
40.6 0.52 2.7652 -1.2322 8 23.13 304.4 2.82 88.1 2.235 0.34 0.81 0 0 0.88
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 23.1
T10
T10
105 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_49
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 317.4 · logP 2.91 · TPSA 87.6
40.8 0.36 4.1924 -1.1356 10 9.01 317.4 2.91 87.6 2.533 0.58 0.70 0 0 0.60
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T10
T10
106 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC391
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 427.5 · logP 4.90 · TPSA 96.0
38.5 0.49 2.6404 -0.9459 14 16.57 427.5 4.90 96.0 3.855 0.48 0.80 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T10
T10
107 5
Front 5
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK155
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 4.14 · TPSA 108.8
37.6 0.43 3.9807 -1.1556 15 11.94 410.5 4.14 108.8 3.506 0.48 0.85 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 2 protein clashes
T10
T10
108 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z756440056
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 24.5, geometry warning, and strain ΔE = 24.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 204.2 · logP 1.12 · TPSA 79.1
56.5 0.59 2.5734 -1.6344 1 24.48 204.2 1.12 79.1 2.301 0.73 0.83 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 24.5
T10
T10
109 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19651549
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 301.3 · logP 3.21 · TPSA 83.6
52.0 0.48 3.5442 -1.5016 2 18.32 301.3 3.21 83.6 2.149 0.70 0.80 0 0 0.44
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T10
T10
110 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49536372
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 23.1, geometry warning, and strain ΔE = 23.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 278.3 · logP 3.70 · TPSA 64.9
53.3 0.53 2.5630 -1.2719 1 23.11 278.3 3.70 64.9 2.114 0.73 0.69 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 23.1
T10
T10
111 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0301
well-buried hydrophobics
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 23.5, geometry warning, and strain ΔE = 23.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 311.2 · logP 1.79 · TPSA 78.4
48.3 0.50 3.1277 -1.3977 3 23.46 311.2 1.79 78.4 4.083 0.73 0.64 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 23.5
T10
T10
112 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z243733256
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 291.3 · logP 2.05 · TPSA 83.5
49.7 0.46 3.7548 -1.4255 7 16.33 291.3 2.05 83.5 1.621 0.73 0.80 0 0 0.91
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes
T10
T10
113 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56792679
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 23.7, geometry warning, and strain ΔE = 23.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 283.3 · logP 2.41 · TPSA 83.1
48.0 0.54 2.3241 -1.2056 8 23.71 283.3 2.41 83.1 2.725 0.70 0.78 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 23.7
T10
T10
114 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56891526
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 26.1, geometry warning, and strain ΔE = 26.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 279.3 · logP 1.39 · TPSA 90.3
49.0 0.60 1.5863 -1.2965 6 26.14 279.3 1.39 90.3 3.061 0.73 0.66 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 1 protein clash; moderate strain Δ 26.1
T10
T10
115 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45690049
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 23.0, geometry warning, and strain ΔE = 23.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 291.3 · logP 2.50 · TPSA 74.8
50.0 0.52 2.5697 -1.2163 6 22.99 291.3 2.50 74.8 2.276 0.73 0.77 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 23.0
T10
T10
116 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z55928790
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 5 clashes; 11 protein contact clashes; moderate strain Δ 28.5, geometry warning, and strain ΔE = 28.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 317.4 · logP 3.17 · TPSA 65.2
47.1 0.60 1.3630 -1.0835 8 28.46 317.4 3.17 65.2 2.209 0.62 0.72 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 11 protein contact clashes; moderate strain Δ 28.5
T10
T10
117 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z594284200
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 21.4, geometry warning, and strain ΔE = 21.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 255.2 · logP -1.97 · TPSA 139.3
46.0 0.37 4.2190 -1.3356 4 21.41 255.2 -1.97 139.3 2.998 0.66 0.75 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes; moderate strain Δ 21.4
T10
T10
118 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_171
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 9 protein contact clashes; moderate strain Δ 20.8, geometry warning, and strain ΔE = 20.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 373.5 · logP 3.25 · TPSA 89.0
48.3 0.59 1.2878 -0.9951 7 20.83 373.5 3.25 89.0 2.132 0.58 0.75 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 9 protein contact clashes; moderate strain Δ 20.8
T10
T10
119 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC1_139
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 279.3 · logP 2.88 · TPSA 72.0
46.2 0.48 3.0144 -1.3038 8 17.63 279.3 2.88 72.0 2.945 0.73 0.71 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 2 protein clashes
T10
T10
120 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z227838904
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes; moderate strain Δ 27.3, geometry warning, and strain ΔE = 27.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 317.8 · logP 2.90 · TPSA 83.5
45.3 0.44 3.6913 -1.3074 5 27.33 317.8 2.90 83.5 1.972 0.62 0.61 0 0 0.91
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; moderate strain Δ 27.3
T10
T10
121 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56789391
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 328.3 · logP 2.78 · TPSA 102.2
45.0 0.51 3.5109 -1.5379 9 13.25 328.3 2.78 102.2 2.464 0.55 0.82 0 0 0.44
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes
T10
T10
122 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_108
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 14 clashes; 3 protein clashes, geometry warning, and strain ΔE = 18.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 424.3 · logP 2.94 · TPSA 113.2
40.7 0.25 4.6192 -0.9408 6 18.37 424.3 2.94 113.2 2.542 0.58 0.79 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 3 protein clashes
T10
T10
123 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30857987
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.8 · logP 1.89 · TPSA 89.3
44.0 0.33 3.9344 -1.0603 10 12.10 352.8 1.89 89.3 1.746 0.70 0.85 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 3 protein clashes
T10
T10
124 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z17792562
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 333.8 · logP 2.69 · TPSA 72.7
40.6 0.39 3.5722 -1.0485 9 17.24 333.8 2.69 72.7 2.861 0.65 0.57 0 0 0.93
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T10
T10
125 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0368
well-buried hydrophobics, reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 21.0, geometry warning, and strain ΔE = 21.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 282.3 · logP -0.14 · TPSA 138.2
40.8 0.35 4.7221 -1.3932 4 21.00 282.3 -0.14 138.2 2.663 0.60 0.59 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 21.0
T10
T10
126 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49614230
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 298.3 · logP 1.43 · TPSA 110.4
40.9 0.24 5.4258 -1.2135 9 13.47 298.3 1.43 110.4 2.505 0.73 0.75 0 0 0.44
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 3 protein clashes
T10
T10
127 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z18509545
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash, geometry warning, and strain ΔE = 18.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 2.78 · TPSA 84.9
38.9 0.49 2.5830 -0.9302 14 18.09 410.5 2.78 84.9 2.948 0.55 0.68 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T10
T10
128 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC369
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 427.5 · logP 3.96 · TPSA 100.6
43.2 0.48 2.7742 -0.9947 12 15.27 427.5 3.96 100.6 3.829 0.66 0.85 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T10
T10
129 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK37
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 9 protein contact clashes; moderate strain Δ 21.8, geometry warning, and strain ΔE = 21.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 366.5 · logP 4.53 · TPSA 47.9
39.7 0.51 2.0115 -0.8851 15 21.83 366.5 4.53 47.9 2.802 0.58 0.75 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 9 protein contact clashes; moderate strain Δ 21.8
T10
T10
130 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z16211652
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 389.9 · logP 4.00 · TPSA 88.2
38.3 0.24 5.1552 -1.0693 9 15.86 389.9 4.00 88.2 2.158 0.51 0.85 0 0 0.38
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes
T10
T10
131 6
Front 6
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC487
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 427.5 · logP 3.96 · TPSA 100.6
38.6 0.36 4.2161 -1.0411 14 13.79 427.5 3.96 100.6 3.829 0.66 0.83 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
T10
T10
132 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56785135
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 1 protein clash; moderate strain Δ 26.7, geometry warning, and strain ΔE = 26.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 272.3 · logP 2.28 · TPSA 75.3
52.8 0.57 1.6982 -1.2015 1 26.71 272.3 2.28 75.3 3.239 0.73 0.74 0 0 0.82
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 1 protein clash; moderate strain Δ 26.7
T10
T10
133 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49728376
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; high strain Δ 31.8, geometry warning, and strain ΔE = 31.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 328.3 · logP 1.69 · TPSA 89.4
53.1 0.51 2.6252 -1.1020 1 31.81 328.3 1.69 89.4 2.685 0.73 0.81 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; high strain Δ 31.8
T10
T10
134 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC1_32
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 2 protein clashes; moderate strain Δ 23.9, geometry warning, and strain ΔE = 23.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 236.3 · logP 2.51 · TPSA 77.8
47.2 0.44 3.5594 -1.4238 5 23.88 236.3 2.51 77.8 2.673 0.73 0.75 0 0 0.56
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 2 protein clashes; moderate strain Δ 23.9
T10
T10
135 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_3273
54% of hydrophobic surface appears solvent-exposed (7/13 atoms). Partial exposure is common but may limit selectivity and membrane permeability.
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 5 clashes; 3 protein clashes; high strain Δ 34.9 and strain ΔE = 34.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 265.3 · logP -0.81 · TPSA 91.2
45.6 0.35 4.2835 -1.2607 7 34.93 265.3 -0.81 91.2 5.236 0.70 0.60 0 0 0.49
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
geometry warning; 5 clashes; 3 protein clashes; high strain Δ 34.9
T10
T10
136 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z193095380
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; high strain Δ 34.3, geometry warning, and strain ΔE = 34.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 333.4 · logP 2.67 · TPSA 64.6
46.1 0.54 2.3307 -1.1177 9 34.33 333.4 2.67 64.6 2.379 0.65 0.79 0 0 0.91
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; high strain Δ 34.3
T10
T10
137 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0430
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; high strain Δ 36.3, geometry warning, and strain ΔE = 36.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 318.4 · logP 2.34 · TPSA 95.8
47.8 0.40 3.7208 -1.0819 2 36.29 318.4 2.34 95.8 1.984 0.62 0.79 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; high strain Δ 36.3
T10
T10
138 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z147200608
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 5 clashes; 3 protein clashes; high strain Δ 34.0, geometry warning, and strain ΔE = 34.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 301.3 · logP 1.30 · TPSA 113.8
46.3 0.44 3.8295 -1.2264 8 34.02 301.3 1.30 113.8 2.474 0.70 0.83 0 0 0.67
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; high strain Δ 34.0
T10
T10
139 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z49615787
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; high strain Δ 52.5, geometry warning, and strain ΔE = 52.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 276.2 · logP 1.55 · TPSA 115.1
48.3 0.59 2.1983 -1.3518 6 52.55 276.2 1.55 115.1 2.599 0.73 0.82 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; high strain Δ 52.5
T10
T10
140 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_56
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 21.2, geometry warning, and strain ΔE = 21.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 319.4 · logP 3.68 · TPSA 55.6
43.7 0.44 2.7647 -0.9967 8 21.20 319.4 3.68 55.6 2.513 0.62 0.72 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 21.2
T10
T10
141 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45537933
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 22.3, geometry warning, and strain ΔE = 22.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 326.4 · logP 0.81 · TPSA 106.3
46.9 0.38 3.9664 -1.2018 7 22.26 326.4 0.81 106.3 1.714 0.73 0.81 0 0 0.85
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 22.3
T10
T10
142 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57705339
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.8 · logP 4.30 · TPSA 55.4
45.2 0.41 3.5254 -1.1180 7 18.08 347.8 4.30 55.4 1.770 0.62 0.73 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes
T10
T10
143 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z133716394
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 27.3, geometry warning, and strain ΔE = 27.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 374.9 · logP 1.81 · TPSA 97.5
46.3 0.39 3.9316 -1.1776 8 27.34 374.9 1.81 97.5 1.870 0.73 0.86 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 27.3
T10
T10
144 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z18499260
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 26.3, geometry warning, and strain ΔE = 26.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 264.3 · logP 1.81 · TPSA 75.3
46.8 0.40 3.9751 -1.3707 6 26.28 264.3 1.81 75.3 2.213 0.73 0.82 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 3 protein clashes; moderate strain Δ 26.3
T10
T10
145 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC325
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 25.7, geometry warning, and strain ΔE = 25.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 320.4 · logP 1.67 · TPSA 81.4
49.4 0.47 2.9743 -1.1796 3 25.67 320.4 1.67 81.4 1.711 0.70 0.65 0 0 0.76
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 25.7
T10
T10
146 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z131156214
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 356.8 · logP 3.21 · TPSA 78.3
43.1 0.45 2.7311 -0.9804 10 22.86 356.8 3.21 78.3 2.176 0.58 0.80 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 22.9
T10
T10
147 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z31233831
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 26.1, geometry warning, and strain ΔE = 26.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 362.5 · logP 2.61 · TPSA 98.0
43.9 0.49 2.7211 -1.0824 10 26.07 362.5 2.61 98.0 2.249 0.58 0.79 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; moderate strain Δ 26.1
T10
T10
148 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_911
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 4 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 311.3 · logP 1.39 · TPSA 93.8
42.0 0.40 3.2793 -1.0329 12 17.61 311.3 1.39 93.8 2.993 0.73 0.77 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 2 protein clashes
T10
T10
149 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z2418739356
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 311.8 · logP 3.46 · TPSA 66.4
42.1 0.41 3.5983 -1.2538 8 17.81 311.8 3.46 66.4 2.005 0.65 0.57 0 0 0.91
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
150 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_110
native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 8 protein contact clashes; moderate strain Δ 27.1, geometry warning, and strain ΔE = 27.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 436.3 · logP 2.81 · TPSA 122.4
45.1 0.56 1.6835 -0.9449 8 27.06 436.3 2.81 122.4 2.518 0.52 0.77 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 8 protein contact clashes; moderate strain Δ 27.1
T10
T10
151 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19455663
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.1, geometry warning, and strain ΔE = 22.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 360.4 · logP 3.91 · TPSA 66.6
41.8 0.31 4.6277 -1.1192 8 22.08 360.4 3.91 66.6 2.252 0.73 0.65 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 22.1
T10
T10
152 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z27682971
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 3 protein clashes, geometry warning, and strain ΔE = 19.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.3 · logP 1.69 · TPSA 119.5
40.0 0.21 5.2671 -1.0133 10 19.04 344.3 1.69 119.5 1.899 0.70 0.84 0 0 0.70
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes
T10
T10
153 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z28352384
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 24.0, geometry warning, and strain ΔE = 24.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 449.4 · logP 5.93 · TPSA 60.5
36.8 0.42 3.2733 -0.8673 10 24.00 449.4 5.93 60.5 2.588 0.25 0.84 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash; moderate strain Δ 24.0
T10
T10
154 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z15849136
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 4 protein clashes, geometry warning, and strain ΔE = 19.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 332.4 · logP 1.61 · TPSA 84.9
37.7 0.20 5.4701 -1.0125 9 19.08 332.4 1.61 84.9 2.832 0.73 0.63 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 4 protein clashes
T10
T10
155 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
TC490
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 394.5 · logP 3.58 · TPSA 92.4
37.8 0.43 3.0578 -0.9601 14 16.57 394.5 3.58 92.4 3.774 0.58 0.75 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 1 protein clash
T10
T10
156 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_90
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 22.4, geometry warning, and strain ΔE = 22.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 340.3 · logP 2.70 · TPSA 78.3
42.6 0.43 2.8936 -0.9659 10 22.43 340.3 2.70 78.3 2.181 0.58 0.80 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 22.4
T10
T10
157 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK214
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash, geometry warning, and strain ΔE = 19.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 3.80 · TPSA 100.6
38.3 0.43 3.0514 -0.9373 15 19.78 409.5 3.80 100.6 3.606 0.66 0.75 0 0 0.61
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash
T10
T10
158 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z18922521
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 13 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 372.8 · logP 2.78 · TPSA 97.7
36.8 0.23 4.8358 -0.9339 10 17.89 372.8 2.78 97.7 2.131 0.62 0.66 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 3 protein clashes
T10
T10
159 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56174083
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 13 clashes; 1 protein clash and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 354.4 · logP 4.37 · TPSA 58.3
33.6 0.44 2.9237 -0.9945 16 17.87 354.4 4.37 58.3 2.335 0.43 0.62 0 0 0.69
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 13 clashes; 1 protein clash
T10
T10
160 7
Front 7
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK160
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 3 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 410.5 · logP 4.14 · TPSA 108.8
32.7 0.25 5.4837 -1.1167 14 15.28 410.5 4.14 108.8 3.520 0.48 0.86 0 0 0.55
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 3 protein clashes
T10
T10
161 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30612183
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 1 protein clash; high strain Δ 36.2, geometry warning, and strain ΔE = 36.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 262.3 · logP 3.56 · TPSA 66.0
52.6 0.53 1.9176 -1.2034 1 36.16 262.3 3.56 66.0 1.817 0.73 0.83 0 0 0.77
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 1 protein clash; high strain Δ 36.2
T10
T10
162 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_2299
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Good docking score, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 7 clashes; 14 protein contact clashes; high strain Δ 32.6, geometry warning, and strain ΔE = 32.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 279.3 · logP -0.70 · TPSA 113.2
50.5 0.57 1.8996 -1.1843 3 32.58 279.3 -0.70 113.2 2.959 0.73 0.66 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 14 protein contact clashes; high strain Δ 32.6
T10
T10
163 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56919893
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes; moderate strain Δ 28.3, geometry warning, and strain ΔE = 28.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 369.5 · logP 0.38 · TPSA 106.5
46.3 0.37 4.4158 -1.2794 4 28.26 369.5 0.38 106.5 2.672 0.70 0.80 0 0 0.48
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; moderate strain Δ 28.3
T10
T10
164 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_2311
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 3 clashes; 3 protein clashes, geometry warning, and strain ΔE = 19.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 235.2 · logP 0.15 · TPSA 86.9
49.3 0.42 3.3014 -1.3932 2 19.27 235.2 0.15 86.9 2.453 0.73 0.81 0 0 0.66
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 3 clashes; 3 protein clashes
T10
T10
165 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_3262
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 22.9, geometry warning, and strain ΔE = 22.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.3 · logP 2.75 · TPSA 79.5
45.7 0.40 3.4312 -1.1983 7 22.89 281.3 2.75 79.5 1.912 0.70 0.83 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 22.9
T10
T10
166 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45635483
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 3 protein clashes; high strain Δ 30.3, geometry warning, and strain ΔE = 30.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 368.5 · logP 2.43 · TPSA 106.3
44.0 0.26 5.1420 -1.1503 4 30.32 368.5 2.43 106.3 1.935 0.62 0.90 0 0 0.86
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 3 protein clashes; high strain Δ 30.3
T10
T10
167 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44851669
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 278.3 · logP 3.08 · TPSA 59.4
43.0 0.37 3.8298 -1.1872 9 17.66 278.3 3.08 59.4 2.121 0.73 0.69 0 0 0.59
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 2 protein clashes
T10
T10
168 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_1124
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 5 clashes; 3 protein clashes; high strain Δ 35.9, geometry warning, and strain ΔE = 35.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 250.3 · logP 0.87 · TPSA 107.7
41.3 0.38 4.3617 -1.4228 10 35.91 250.3 0.87 107.7 3.192 0.73 0.80 0 0 0.53
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; high strain Δ 35.9
T10
T10
169 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z237649744
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 21.2, geometry warning, and strain ΔE = 21.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 393.3 · logP 3.81 · TPSA 68.3
43.6 0.39 3.6067 -1.0860 7 21.22 393.3 3.81 68.3 1.981 0.62 0.69 0 0 0.73
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 21.2
T10
T10
170 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57088460
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 24.1, geometry warning, and strain ΔE = 24.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 400.3 · logP 3.81 · TPSA 72.5
40.5 0.42 3.1716 -1.0469 10 24.12 400.3 3.81 72.5 2.381 0.65 0.61 0 0 0.83
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 24.1
T10
T10
171 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0781
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and well-buried hydrophobics.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 29.9, geometry warning, and strain ΔE = 29.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 310.3 · logP -0.53 · TPSA 116.2
40.0 0.39 3.7082 -1.1652 6 29.88 310.3 -0.53 116.2 2.366 0.67 0.57 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 29.9
T10
T10
172 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z45537946
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 22.7, geometry warning, and strain ΔE = 22.7 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 344.4 · logP 0.95 · TPSA 106.3
45.8 0.34 4.3142 -1.1855 7 22.65 344.4 0.95 106.3 1.784 0.73 0.81 0 0 0.84
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 22.7
T10
T10
173 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_259
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 24.2, geometry warning, and strain ΔE = 24.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 286.3 · logP 3.07 · TPSA 91.5
39.3 0.46 3.1570 -1.2573 8 24.22 286.3 3.07 91.5 2.515 0.45 0.79 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Alerts x1, Geometry warning, geometry warning; 7 clashes; 3 protein clashes; moderate strain Δ 24.2
T10
T10
174 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC1_170
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 28.1, geometry warning, and strain ΔE = 28.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 307.3 · logP 2.41 · TPSA 94.8
42.3 0.48 3.3930 -1.3561 11 28.08 307.3 2.41 94.8 2.210 0.58 0.82 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 28.1
T10
T10
175 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_TC1_171
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.1, geometry warning, and strain ΔE = 25.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 307.3 · logP 2.41 · TPSA 94.8
41.3 0.44 3.8076 -1.3274 11 25.11 307.3 2.41 94.8 2.193 0.58 0.80 0 0 0.51
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; moderate strain Δ 25.1
T10
T10
176 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z30857952
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 17 protein contact clashes, geometry warning, and strain ΔE = 18.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 348.4 · logP 1.24 · TPSA 98.5
42.8 0.41 2.8727 -0.9964 11 18.17 348.4 1.24 98.5 1.743 0.70 0.77 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 17 protein contact clashes
T10
T10
177 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_Leish_185
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 26.8, geometry warning, and strain ΔE = 26.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 381.4 · logP 3.52 · TPSA 77.7
38.2 0.44 2.8093 -0.8904 12 26.80 381.4 3.52 77.7 3.654 0.58 0.71 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 8 clashes; 1 protein clash; moderate strain Δ 26.8
T10
T10
178 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z1724000893
reasonable synthesis profile
Details
Why selected: Some docking support, partial native-contact recall, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes, geometry warning, and strain ΔE = 18.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 348.8 · logP 3.70 · TPSA 68.3
43.0 0.38 3.7115 -1.0706 7 18.93 348.8 3.70 68.3 1.930 0.62 0.65 0 0 0.78
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T10
T10
179 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z32377576
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 20.5, geometry warning, and strain ΔE = 20.5 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 417.9 · logP 0.61 · TPSA 149.4
40.0 0.28 4.3922 -0.9320 9 20.54 417.9 0.61 149.4 2.006 0.56 0.83 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 7 clashes; 2 protein clashes; moderate strain Δ 20.5
T10
T10
180 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK62
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 4 clashes; 2 protein clashes; moderate strain Δ 28.0, geometry warning, and strain ΔE = 28.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 366.5 · logP 4.62 · TPSA 57.4
42.0 0.44 2.7123 -1.0555 7 27.96 366.5 4.62 57.4 3.012 0.54 0.79 0 0 0.50
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 2 protein clashes; moderate strain Δ 28.0
T10
T10
181 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z25492290
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 25.9, geometry warning, and strain ΔE = 25.9 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 455.6 · logP 3.55 · TPSA 81.1
32.6 0.42 2.8628 -0.7652 19 25.91 455.6 3.55 81.1 2.887 0.44 0.85 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 1 protein clash; moderate strain Δ 25.9
T10
T10
182 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK218
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes, geometry warning, and strain ΔE = 19.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 423.5 · logP 3.89 · TPSA 100.6
36.3 0.34 4.2739 -1.0112 16 19.59 423.5 3.89 100.6 3.477 0.66 0.83 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes
T10
T10
183 8
Front 8
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
MK213
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 27.8, geometry warning, and strain ΔE = 27.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 409.5 · logP 3.80 · TPSA 100.6
37.8 0.42 3.4318 -1.0132 15 27.77 409.5 3.80 100.6 3.511 0.66 0.83 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 1 protein clash; moderate strain Δ 27.8
T10
T10
184 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
KB_HAT_137
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 1 protein clash; moderate strain Δ 28.4, geometry warning, and strain ΔE = 28.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 281.2 · logP 2.41 · TPSA 81.2
52.4 0.53 2.1976 -1.2440 3 28.40 281.2 2.41 81.2 2.419 0.73 0.87 0 0 0.84
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 1 protein clash; moderate strain Δ 28.4
T10
T10
185 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY1026
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 1 protein clash; high strain Δ 36.0, geometry warning, and strain ΔE = 36.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 320.4 · logP 1.85 · TPSA 101.0
50.0 0.44 3.0438 -1.0788 3 36.01 320.4 1.85 101.0 1.971 0.73 0.84 0 0 0.90
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 1 protein clash; high strain Δ 36.0
T10
T10
186 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z55329110
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; high strain Δ 30.8, geometry warning, and strain ΔE = 30.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 290.2 · logP -0.20 · TPSA 121.6
45.6 0.42 3.3075 -1.1834 4 30.78 290.2 -0.20 121.6 2.733 0.70 0.70 0 0 0.65
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; high strain Δ 30.8
T10
T10
187 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_338
well-buried hydrophobics, native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 2 protein clashes; high strain Δ 48.8, geometry warning, and strain ΔE = 48.8 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 274.7 · logP -1.47 · TPSA 124.0
44.1 0.39 3.8682 -1.3348 2 48.83 274.7 -1.47 124.0 3.816 0.66 0.84 0 0 0.54
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 2 protein clashes; high strain Δ 48.8
T10
T10
188 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z334929348
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 28.3, geometry warning, and strain ΔE = 28.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 347.2 · logP 2.96 · TPSA 92.4
42.4 0.34 4.1553 -1.2112 7 28.33 347.2 2.96 92.4 2.063 0.62 0.84 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 2 protein clashes; moderate strain Δ 28.3
T10
T10
189 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_2770
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 14 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 327.3 · logP 1.17 · TPSA 102.8
40.9 0.33 3.6481 -1.0291 9 17.28 327.3 1.17 102.8 2.475 0.70 0.72 0 0 0.72
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 14 clashes; 2 protein clashes
T10
T10
190 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z44349777
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 28.6, geometry warning, and strain ΔE = 28.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 387.4 · logP 1.90 · TPSA 131.5
39.7 0.31 4.7432 -1.0512 12 28.62 387.4 1.90 131.5 2.095 0.66 0.85 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 12 clashes; 3 protein clashes; moderate strain Δ 28.6
T10
T10
191 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z19673935
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 24.6, geometry warning, and strain ΔE = 24.6 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 352.4 · logP 2.97 · TPSA 80.9
46.4 0.35 3.4985 -1.0924 2 24.59 352.4 2.97 80.9 2.249 0.70 0.79 0 0 0.57
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 24.6
T10
T10
192 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z31413736
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 25.1, geometry warning, and strain ΔE = 25.1 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 389.8 · logP 0.89 · TPSA 149.4
42.1 0.31 4.0260 -0.9868 7 25.06 389.8 0.89 149.4 1.905 0.63 0.80 0 0 0.71
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes; moderate strain Δ 25.1
T10
T10
193 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z246803428
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 20.2, geometry warning, and strain ΔE = 20.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 328.4 · logP 3.35 · TPSA 68.3
42.7 0.37 3.5824 -1.0369 8 20.24 328.4 3.35 68.3 1.916 0.62 0.73 0 0 0.80
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 11 clashes; 2 protein clashes; moderate strain Δ 20.2
T10
T10
194 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
NMT-TY0775
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 10 clashes; 2 protein clashes; high strain Δ 30.3, geometry warning, and strain ΔE = 30.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 322.4 · logP 0.40 · TPSA 153.1
40.9 0.27 4.7820 -1.1226 5 30.34 322.4 0.40 153.1 2.221 0.60 0.79 0 0 0.64
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 10 clashes; 2 protein clashes; high strain Δ 30.3
T10
T10
195 9
Front 9
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z56872897
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 4 clashes; 4 protein clashes; high strain Δ 68.3, geometry warning, and strain ΔE = 68.3 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 328.3 · logP 0.68 · TPSA 162.9
34.9 0.11 6.0692 -1.0964 1 68.35 328.3 0.68 162.9 2.646 0.60 0.82 0 0 0.47
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 4 clashes; 4 protein clashes; high strain Δ 68.3
T10
T10
196 10
Front 10
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z104497306
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 30.0, geometry warning, and strain ΔE = 30.0 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 265.3 · logP 0.45 · TPSA 124.0
46.5 0.39 4.0075 -1.4741 4 29.99 265.3 0.45 124.0 2.092 0.70 0.83 0 0 0.74
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; moderate strain Δ 30.0
T10
T10
197 10
Front 10
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z57329641
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 5 clashes; 3 protein clashes; high strain Δ 42.2, geometry warning, and strain ΔE = 42.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 300.3 · logP 1.77 · TPSA 99.6
46.7 0.38 4.2444 -1.2388 4 42.20 300.3 1.77 99.6 2.518 0.73 0.86 0 0 0.58
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 5 clashes; 3 protein clashes; high strain Δ 42.2
T10
T10
198 10
Front 10
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
ulfkktlib_626
well-buried hydrophobics, native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and well-buried hydrophobics.
Main concern: geometry warning; 6 clashes; 3 protein clashes; high strain Δ 31.4, geometry warning, and strain ΔE = 31.4 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 343.5 · logP 1.71 · TPSA 110.9
45.5 0.35 4.0239 -1.2177 5 31.37 343.5 1.71 110.9 2.415 0.73 0.85 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 6 clashes; 3 protein clashes; high strain Δ 31.4
T10
T10
199 10
Front 10
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
Z25217831
native-like contacts, reasonable synthesis profile
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 2 protein clashes and geometry warning.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 306.3 · logP 2.86 · TPSA 76.0
43.0 0.33 3.7619 -1.1638 9 13.73 306.3 2.86 76.0 1.886 0.70 0.88 0 0 0.63
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 2 protein clashes
T10
T10
200 10
Front 10
Binding Medium
Geometry Bad
Data Complete
Action Redock or minimize
OHD_Leishmania_143
native-like contacts
Details
Why selected: Some docking support, native-like contact pattern, and good contact coverage.
Main concern: geometry warning; 9 clashes; 15 protein contact clashes; high strain Δ 47.2, geometry warning, and strain ΔE = 47.2 kcal/mol.
Action: Redock the ligand or locally minimize the pose before accepting it as a serious hit.
MW 302.4 · logP -0.56 · TPSA 88.8
41.5 0.53 2.3540 -1.1084 11 47.16 302.4 -0.56 88.8 4.002 0.73 0.70 0 0 0.79
SASA: Done
RDKit SASA
Burial and SASA metrics computed via rdkit.Chem.rdFreeSASA.
Geometry warning, geometry warning; 9 clashes; 15 protein contact clashes; high strain Δ 47.2
Score composition ▼ show
Docking 28% · final rank, interaction-normalized score, raw docking score
Burial 18% · absolute exposed hydrophobic atom count (lower is better)
Strain 14% · strain delta, intra score, geometry sanity
Safety / ADMET 18% · ADMET score with hERG/AMES/DILI/bioaccumulation penalties — Pareto objective
Ecotoxicology 9% · fish/daphnia/algae LC50 classes + bioaccumulation + persistence — Pareto objective
Synthesis 10% · SA score when available, otherwise Fsp3 proxy
Native similarity 12% · contact and H-bond recall when a native reference exists
Diversity shortlist 0% · cached shortlist already includes the novelty-aware selection step

How ranking works: Pareto fronts are built from six default objectives — docking score, ligand efficiency, burial depth, strain energy, ADMET safety, and ecotoxicology (fish/daphnia/algae LC₅₀ + bioaccumulation + persistence). Front 1 contains non-dominated ligands: no other ligand beats them across all six objectives simultaneously. Inside each front, ligands are ordered by a compromise score with explicit penalties for PAINS, reactivity, toxicity alerts, geometry warnings, excluded poses, and artifact annotations. The top 200 are returned using a diversity-aware selection step.

Methodology ▼ show
1. Candidate definition. For each target we keep one best pose per ligand, so the shortlist is not inflated by many similar poses of the same compound.
2. Objective set. Each ligand is evaluated across docking quality, absolute nonpolar solvent exposure (`n_exposed`), conformational strain, native-like interaction similarity when a native reference exists, safety and ecotoxicology, synthesizability, and general developability indicators such as QED.
2a. SASA / burial source. `SASA: done` = cached FreeSASA metrics. `queued/running` = background worker scheduled. `failed` = worker failed. `missing` = no SASA cached yet.
3. Liability penalties. PAINS motifs, reactive groups, toxicity alerts, artifact annotations, geometry warnings, and excluded-pose flags reduce the compromise score and are shown explicitly.
4. Pareto ranking. Front 1 = non-dominated ligands (no other ligand is better in all objectives simultaneously). Lower front number = more balanced profile.
5. Missing SASA handling. Missing SASA lowers `Data completeness` to `Provisional` but does not automatically reject a ligand. Binding and geometry axes stay independent.
6. Compromise score. `100 × clamp(weighted positive − liability penalty − missing-data penalty)`. Weights: docking 28%, burial 18%, strain 14%, safety/ecotox 18%, synthesis 10%, native similarity 12% (when reference exists).
7. Component details. Docking = `final_rank_score` 55% + `score_inter_norm` 30% + raw `score` 15%. Strain = `strain_delta` 55% + `score_intra_norm` 30% + geometry sanity 15%.
8. Final shortlist. Top 50 per target taken front-by-front with diversity-aware selection — near-duplicate analogs do not dominate.
How to read the table. `Pareto` = non-dominated layer, `Compromise` = within-front ordering score, `n_exposed` = burial proxy (lower is better), `Strain dE` = conformational stress, colored dots = quick green/orange/red cue.
How to use selections. Mark compounds row-by-row, save to `Current`/`Temp`/`A/B/C` sets, export to SDF/XLSX/CSV, or send to downstream analysis pages.