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MK15

ID 3778

DB demoThis detail page is pinned to the current database context.
Back to results Open docking pose (1)
2D structure

SMILES: Cc1c(C)c2c(c(C)c1O)CC[C@@](C)(C(=O)NCC[NH+]1CCN(C(=O)/C=C/c3ccc(O)c(O)c3)CC1)O2

Formula: C29H38N3O6+ | MW: 524.6380000000005

LogP: 1.3690600000000008 | TPSA: 123.77000000000001

HBA/HBD: 6/5 | RotB: 6

InChIKey: ZMKLYOBCKVYKMY-XVMIVPATSA-O

Recognized patterns

Click a named motif to highlight it in the 2D depiction or launch reverse search.
Highlighted: 1 pattern Amide Clear highlight

Bio motif

Acrylamide Catechol Michael acceptor Hydroquinone Chalcone Hinge binder (C=O-NH) Hinge binder (NH-C=O) N-Methyl amide ×2 H-bond acceptor N H-bond acceptor O ×3 H-bond donor ×5 Gatekeeper aromatic ×2 Michael acceptor (extended) Metal chelator ×2 P-gp efflux flag

Functional group

Carbonyl ×2 Amide ×2 Secondary amine Phenol ×3 Tertiary amine Lactam Aryl ether Enone Ether Alkene

Ring system

Benzene ×2 Piperazine Chromane Chromene Hexahydropyrimidine Tetrahydropyrimidine

Properties

NameValueUnit
DOCK_BASE_INTER_RANK-0.719885-
DOCK_BASE_INTER_RANK-0.707300-
DOCK_BASE_INTER_RANK-0.602734-
DOCK_BASE_INTER_RANK-0.581227-
DOCK_BASE_INTER_RANK-0.652969-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_BOND_LENGTH_OUTLIERS0.000000-
DOCK_CLASH_COUNT16.000000-
DOCK_CLASH_COUNT17.000000-
DOCK_CLASH_COUNT19.000000-
DOCK_CLASH_COUNT17.000000-
DOCK_CLASH_COUNT17.000000-
DOCK_CONTACT_COUNT20.000000-
DOCK_CONTACT_COUNT19.000000-
DOCK_CONTACT_COUNT15.000000-
DOCK_CONTACT_COUNT16.000000-
DOCK_CONTACT_COUNT17.000000-
DOCK_EXPERIMENTT11-
DOCK_EXPERIMENTT12-
DOCK_EXPERIMENTT14-
DOCK_EXPERIMENTT18-
DOCK_EXPERIMENTT21-
DOCK_EXPERIMENT_ID11-
DOCK_EXPERIMENT_ID12-
DOCK_EXPERIMENT_ID14-
DOCK_EXPERIMENT_ID18-
DOCK_EXPERIMENT_ID21-
DOCK_FINAL_RANK3.376667-
DOCK_FINAL_RANK6.163692-
DOCK_FINAL_RANK2.626856-
DOCK_FINAL_RANK2.813399-
DOCK_FINAL_RANK4.985410-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOMETRY_ALERTwarning-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_GEOM_OK0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_HARD_GEOMETRY_FAIL0-
DOCK_IFP::A:ALA401-
DOCK_IFP::A:ARG1371-
DOCK_IFP::A:ARG1401-
DOCK_IFP::A:ARG1411-
DOCK_IFP::A:ARG1441-
DOCK_IFP::A:ARG221-
DOCK_IFP::A:ARG2421-
DOCK_IFP::A:ARG3371-
DOCK_IFP::A:ASN1031-
DOCK_IFP::A:ASN1061-
DOCK_IFP::A:ASN1251-
DOCK_IFP::A:ASN1931-
DOCK_IFP::A:ASP2431-
DOCK_IFP::A:ASP3851-
DOCK_IFP::A:ASP471-
DOCK_IFP::A:CYS521-
DOCK_IFP::A:GLN1241-
DOCK_IFP::A:GLU181-
DOCK_IFP::A:GLU1921-
DOCK_IFP::A:GLU3841-
DOCK_IFP::A:GLY1121-
DOCK_IFP::A:GLY131-
DOCK_IFP::A:GLY1911-
DOCK_IFP::A:GLY391-
DOCK_IFP::A:GLY491-
DOCK_IFP::A:GLY501-
DOCK_IFP::A:HIS1021-
DOCK_IFP::A:HIS1051-
DOCK_IFP::A:HIS1411-
DOCK_IFP::A:HIS1441-
DOCK_IFP::A:HIS2221-
DOCK_IFP::A:ILE1061-
DOCK_IFP::A:ILE1261-
DOCK_IFP::A:ILE3391-
DOCK_IFP::A:LEU171-
DOCK_IFP::A:LEU1941-
DOCK_IFP::A:LEU3391-
DOCK_IFP::A:LEU761-
DOCK_IFP::A:MET1131-
DOCK_IFP::A:MET3861-
DOCK_IFP::A:PHE1891-
DOCK_IFP::A:PHE1901-
DOCK_IFP::A:PHE3831-
DOCK_IFP::A:PHE741-
DOCK_IFP::A:PRO2231-
DOCK_IFP::A:SER1091-
DOCK_IFP::A:SER141-
DOCK_IFP::A:SER2181-
DOCK_IFP::A:SER2821-
DOCK_IFP::A:THR211-
DOCK_IFP::A:THR2411-
DOCK_IFP::A:THR2851-
DOCK_IFP::A:THR3351-
DOCK_IFP::A:TRP211-
DOCK_IFP::A:TYR1101-
DOCK_IFP::A:VAL1871-
DOCK_IFP::A:VAL1881-
DOCK_IFP::A:VAL2211-
DOCK_IFP::A:VAL3361-
DOCK_IFP::A:VAL531-
DOCK_IFP::B:ALA411-
DOCK_IFP::B:ARG1131-
DOCK_IFP::B:ARG1161-
DOCK_IFP::B:ARG461-
DOCK_IFP::B:CYS691-
DOCK_IFP::B:CYS721-
DOCK_IFP::B:GLU1151-
DOCK_IFP::B:GLY701-
DOCK_IFP::B:GLY721-
DOCK_IFP::B:GLY731-
DOCK_IFP::B:GLY741-
DOCK_IFP::B:GLY751-
DOCK_IFP::B:GLY771-
DOCK_IFP::B:HIS111-
DOCK_IFP::B:HIS141-
DOCK_IFP::B:ILE151-
DOCK_IFP::B:ILE731-
DOCK_IFP::B:ILE761-
DOCK_IFP::B:LEU441-
DOCK_IFP::B:MET751-
DOCK_IFP::B:PRO121-
DOCK_IFP::B:PRO181-
DOCK_IFP::B:SER431-
DOCK_IFP::B:SER711-
DOCK_IFP::B:SER741-
DOCK_IFP::B:TYR461-
DOCK_IFP::B:TYR491-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_IMPORT_SCOPEbest_by_name-
DOCK_MAX_CLASH_OVERLAP0.613975-
DOCK_MAX_CLASH_OVERLAP0.614027-
DOCK_MAX_CLASH_OVERLAP0.614082-
DOCK_MAX_CLASH_OVERLAP0.613982-
DOCK_MAX_CLASH_OVERLAP0.613987-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT1-
DOCK_POSE_COUNT1-
DOCK_PRE_RANK3.324737-
DOCK_PRE_RANK6.088260-
DOCK_PRE_RANK2.562592-
DOCK_PRE_RANK2.738172-
DOCK_PRE_RANK4.915696-
DOCK_PRIMARY_POSE_ID7013-
DOCK_PRIMARY_POSE_ID7651-
DOCK_PRIMARY_POSE_ID9084-
DOCK_PRIMARY_POSE_ID11790-
DOCK_PRIMARY_POSE_ID13817-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_RANKING_MODEinter_strain_penalized-
DOCK_REPORT_IDselection_import_t11-
DOCK_REPORT_IDselection_import_t12-
DOCK_REPORT_IDselection_import_t14-
DOCK_REPORT_IDselection_import_t18-
DOCK_REPORT_IDselection_import_t21-
DOCK_RESIDUE_CONTACTSA:ALA40;A:ASN125;A:ASN193;A:GLN124;A:GLU192;A:GLY191;A:GLY39;A:HIS144;A:HIS222;A:ILE126;A:LEU194;A:LEU76;A:PHE189;A:PHE190;A:PHE74;A:PRO223;A:SER218;A:VAL187;A:VAL188;A:VAL221-
DOCK_RESIDUE_CONTACTSA:ARG140;A:ARG144;A:ASN106;A:HIS105;A:HIS141;B:ARG116;B:ARG46;B:CYS72;B:GLU115;B:GLY73;B:GLY75;B:GLY77;B:HIS14;B:ILE15;B:ILE76;B:LEU44;B:PRO18;B:SER74;B:TYR49-
DOCK_RESIDUE_CONTACTSA:ARG22;A:ARG242;A:ARG337;A:ASP243;A:ASP385;A:ASP47;A:GLU384;A:LEU339;A:MET386;A:PHE383;A:SER282;A:THR21;A:THR241;A:THR285;A:VAL336-
DOCK_RESIDUE_CONTACTSA:CYS52;A:GLU18;A:GLY112;A:GLY13;A:GLY49;A:GLY50;A:ILE106;A:ILE339;A:LEU17;A:MET113;A:SER109;A:SER14;A:THR335;A:TRP21;A:TYR110;A:VAL53-
DOCK_RESIDUE_CONTACTSA:ARG137;A:ARG141;A:ASN103;A:HIS102;B:ALA41;B:ARG113;B:CYS69;B:GLY70;B:GLY72;B:GLY74;B:HIS11;B:ILE73;B:MET75;B:PRO12;B:SER43;B:SER71;B:TYR46-
DOCK_SCAFFOLDO=C(NCC[NH+]1CCN(C(=O)C=Cc2ccccc2)CC1)C1CCc2ccccc2O1-
DOCK_SCAFFOLDO=C(NCC[NH+]1CCN(C(=O)C=Cc2ccccc2)CC1)C1CCc2ccccc2O1-
DOCK_SCAFFOLDO=C(NCC[NH+]1CCN(C(=O)C=Cc2ccccc2)CC1)C1CCc2ccccc2O1-
DOCK_SCAFFOLDO=C(NCC[NH+]1CCN(C(=O)C=Cc2ccccc2)CC1)C1CCc2ccccc2O1-
DOCK_SCAFFOLDO=C(NCC[NH+]1CCN(C(=O)C=Cc2ccccc2)CC1)C1CCc2ccccc2O1-
DOCK_SCORE-26.082100-
DOCK_SCORE-23.712500-
DOCK_SCORE-21.686000-
DOCK_SCORE-19.279500-
DOCK_SCORE-21.629800-
DOCK_SCORE_INTER-27.355600-
DOCK_SCORE_INTER-26.877400-
DOCK_SCORE_INTER-22.903900-
DOCK_SCORE_INTER-22.086600-
DOCK_SCORE_INTER-24.812800-
DOCK_SCORE_INTER_KCAL-6.533776-
DOCK_SCORE_INTER_KCAL-6.419559-
DOCK_SCORE_INTER_KCAL-5.470505-
DOCK_SCORE_INTER_KCAL-5.275296-
DOCK_SCORE_INTER_KCAL-5.926438-
DOCK_SCORE_INTER_NORM-0.719885-
DOCK_SCORE_INTER_NORM-0.707300-
DOCK_SCORE_INTER_NORM-0.602734-
DOCK_SCORE_INTER_NORM-0.581227-
DOCK_SCORE_INTER_NORM-0.652969-
DOCK_SCORE_INTRA1.273510-
DOCK_SCORE_INTRA3.164870-
DOCK_SCORE_INTRA1.217850-
DOCK_SCORE_INTRA2.807090-
DOCK_SCORE_INTRA3.183060-
DOCK_SCORE_INTRA_KCAL0.304173-
DOCK_SCORE_INTRA_KCAL0.755917-
DOCK_SCORE_INTRA_KCAL0.290879-
DOCK_SCORE_INTRA_KCAL0.670462-
DOCK_SCORE_INTRA_KCAL0.760261-
DOCK_SCORE_INTRA_NORM0.033513-
DOCK_SCORE_INTRA_NORM0.083286-
DOCK_SCORE_INTRA_NORM0.032049-
DOCK_SCORE_INTRA_NORM0.073871-
DOCK_SCORE_INTRA_NORM0.083765-
DOCK_SCORE_KCAL-6.229605-
DOCK_SCORE_KCAL-5.663636-
DOCK_SCORE_KCAL-5.179614-
DOCK_SCORE_KCAL-4.604831-
DOCK_SCORE_KCAL-5.166191-
DOCK_SCORE_NORM-0.686372-
DOCK_SCORE_NORM-0.624014-
DOCK_SCORE_NORM-0.570685-
DOCK_SCORE_NORM-0.507356-
DOCK_SCORE_NORM-0.569204-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_RESTR_NORM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SCORE_SYSTEM_NORM0.000000-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SELECTION_EXCLUDED0-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SEVERE_CLASH_COUNT0.000000-
DOCK_SOURCE_FILET11_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET12_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET14_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET18_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FILET21_top5_kcal_zscore_compound_names.sdf-
DOCK_SOURCE_FORMULAC29H38N3O6+-
DOCK_SOURCE_FORMULAC29H38N3O6+-
DOCK_SOURCE_FORMULAC29H38N3O6+-
DOCK_SOURCE_FORMULAC29H38N3O6+-
DOCK_SOURCE_FORMULAC29H38N3O6+-
DOCK_SOURCE_HBA6.000000-
DOCK_SOURCE_HBA6.000000-
DOCK_SOURCE_HBA6.000000-
DOCK_SOURCE_HBA6.000000-
DOCK_SOURCE_HBA6.000000-
DOCK_SOURCE_HBD5.000000-
DOCK_SOURCE_HBD5.000000-
DOCK_SOURCE_HBD5.000000-
DOCK_SOURCE_HBD5.000000-
DOCK_SOURCE_HBD5.000000-
DOCK_SOURCE_HEAVY_ATOMS38.000000-
DOCK_SOURCE_HEAVY_ATOMS38.000000-
DOCK_SOURCE_HEAVY_ATOMS38.000000-
DOCK_SOURCE_HEAVY_ATOMS38.000000-
DOCK_SOURCE_HEAVY_ATOMS38.000000-
DOCK_SOURCE_LOGP1.369060-
DOCK_SOURCE_LOGP1.369060-
DOCK_SOURCE_LOGP1.369060-
DOCK_SOURCE_LOGP1.369060-
DOCK_SOURCE_LOGP1.369060-
DOCK_SOURCE_MW524.638000-
DOCK_SOURCE_MW524.638000-
DOCK_SOURCE_MW524.638000-
DOCK_SOURCE_MW524.638000-
DOCK_SOURCE_MW524.638000-
DOCK_SOURCE_NAMEMK15-
DOCK_SOURCE_NAMEMK15-
DOCK_SOURCE_NAMEMK15-
DOCK_SOURCE_NAMEMK15-
DOCK_SOURCE_NAMEMK15-
DOCK_SOURCE_RINGS4.000000-
DOCK_SOURCE_RINGS4.000000-
DOCK_SOURCE_RINGS4.000000-
DOCK_SOURCE_RINGS4.000000-
DOCK_SOURCE_RINGS4.000000-
DOCK_SOURCE_TPSA123.770000-
DOCK_SOURCE_TPSA123.770000-
DOCK_SOURCE_TPSA123.770000-
DOCK_SOURCE_TPSA123.770000-
DOCK_SOURCE_TPSA123.770000-
DOCK_STRAIN_DELTA35.711448-
DOCK_STRAIN_DELTA46.097851-
DOCK_STRAIN_DELTA41.358288-
DOCK_STRAIN_DELTA46.013216-
DOCK_STRAIN_DELTA43.706145-
DOCK_STRAIN_OK0-
DOCK_STRAIN_OK0-
DOCK_STRAIN_OK0-
DOCK_STRAIN_OK0-
DOCK_STRAIN_OK0-
DOCK_TARGETT11-
DOCK_TARGETT12-
DOCK_TARGETT14-
DOCK_TARGETT18-
DOCK_TARGETT21-
EXACT_MASS524.27551235609Da
FORMULAC29H38N3O6+-
HBA6-
HBD5-
LOGP1.3690600000000008-
MOL_WEIGHT524.6380000000005g/mol
QED_SCORE0.28736669304203427-
ROTATABLE_BONDS6-
TPSA123.77000000000001A^2

Docking across targets

This compound is global in the current database. Below you can review all docking experiments and targets that contain imported poses for it, which is the basis for reverse docking analysis.

Open primary docking pose Docking experiments Reverse docking explorer Protein structures Docking IFP projection
TargetExperimentReportPosesBest rankBest scoreNative overlapNative recallRMSD
T11 T11 selection_import_t11 1 3.376666663328105 -26.0821 - - - Best pose
T11 — T11 1 poses · report selection_import_t11
Native comparison is calculated against the uploaded native ligand for the same experiment/target whenever it is available.
PoseFinal rankInter normScoreHBContactsNative overlapNative recallHB strictHB roleHB residueRMSDExcludedNotes
239 3.376666663328105 -0.719885 -26.0821 7 20 - - - - - - no geometry warning; 16 clashes; 2 protein clashes; high strain Δ 35.7 Open pose
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Drug Similarity

Shared structural fragments with approved drugs — based on faircheckmol profile fingerprint.
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Structural Profile Fingerprint

Named-bit fingerprint from curated SMARTS patterns. Each bit = one chemical pattern.

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ADMET Profile

Computed from structure using RDKit. Indicative only — not a substitute for experimental data.

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3D Conformer

ETKDGv3 conformer generation with UFF minimisation. Rendered with 3Dmol.js.

Open receptor–ligand complex
This docking hit has a stored pose-level complex analysis page with clickable hydrogen bonds, π–π contacts, hydrophobic contacts, and clash inspection.
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